FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6247, 212 aa
  1>>>pF1KE6247 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5003+/-0.000973; mu= 3.4155+/- 0.058
 mean_var=106.0882+/-21.663, 0's: 0 Z-trim(107.4): 21  B-trim: 248 in 1/52
 Lambda= 0.124520
 statistics sampled from 9551 (9566) to 9551 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.510

The best scores are:                                      opt bits E(32554)
CCDS42355.1 GOSR2 gene_id:9570|Hs108|chr17         ( 212) 1373 256.9 6.9e-69
CCDS11507.1 GOSR2 gene_id:9570|Hs108|chr17         ( 213) 1265 237.5 4.8e-63
CCDS45719.1 GOSR2 gene_id:9570|Hs108|chr17         ( 195) 1043 197.6 4.5e-51
CCDS82148.1 GOSR2 gene_id:9570|Hs108|chr17         ( 165)  736 142.4 1.5e-34


>>CCDS42355.1 GOSR2 gene_id:9570|Hs108|chr17              (212 aa)
 initn: 1373 init1: 1373 opt: 1373  Z-score: 1350.2  bits: 256.9 E(32554): 6.9e-69
Smith-Waterman score: 1373; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
              130       140       150       160       170       180

              190       200       210  
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
       ::::::::::::::::::::::::::::::::
CCDS42 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
              190       200       210  

>>CCDS11507.1 GOSR2 gene_id:9570|Hs108|chr17              (213 aa)
 initn: 1265 init1: 1265 opt: 1265  Z-score: 1245.4  bits: 237.5 E(32554): 4.8e-63
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
              130       140       150       160       170       180

              190       200       210   
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT 
       :::::::::::::::                  
CCDS11 LIEKRAFQDKYFMIGTQGSCQTAHFGGRSAGSS
              190       200       210   

>>CCDS45719.1 GOSR2 gene_id:9570|Hs108|chr17              (195 aa)
 initn: 1038 init1: 1038 opt: 1043  Z-score: 1030.5  bits: 197.6 E(32554): 4.5e-51
Smith-Waterman score: 1043; 88.8% identity (92.5% similar) in 187 aa overlap (1-182:1-187)

               10        20        30        40        50        60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
               70        80        90       100       110       120

              130       140       150            160       170     
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLK-----GTQKKILDIANMLGLS
       :::::::::::::::::::::::::::::::::::::::     : ..:   .. .  .:
CCDS45 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKVGSLLGDREKASCFSLIQQFS
              130       140       150       160       170       180

         180       190       200       210  
pF1KE6 NTVMRLIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
       : :. ::                              
CCDS45 NCVYILITCPQIVIF                      
              190                           

>>CCDS82148.1 GOSR2 gene_id:9570|Hs108|chr17              (165 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 733.6  bits: 142.4 E(32554): 1.5e-34
Smith-Waterman score: 963; 77.8% identity (77.8% similar) in 212 aa overlap (1-212:1-165)

               10        20        30        40        50        60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS82 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTN--------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
                                              :::::::::::::::::::::
CCDS82 ---------------------------------------GTQKKILDIANMLGLSNTVMR
                                                   120       130   

              190       200       210  
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
       ::::::::::::::::::::::::::::::::
CCDS82 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
           140       150       160     




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:26:10 2016 done: Tue Nov  8 11:26:10 2016
 Total Scan time:  1.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]