FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6246, 267 aa
  1>>>pF1KE6246 267 - 267 aa - 267 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9300+/-0.000733; mu= 12.3701+/- 0.044
 mean_var=84.9660+/-16.281, 0's: 0 Z-trim(110.1): 12  B-trim: 0 in 0/52
 Lambda= 0.139140
 statistics sampled from 11338 (11346) to 11338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.349), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS6168.1 PENK gene_id:5179|Hs108|chr8            ( 267) 1833 377.3 6.2e-105
CCDS13023.1 PDYN gene_id:5173|Hs108|chr20          ( 254)  330 75.6 3.9e-14


>>CCDS6168.1 PENK gene_id:5179|Hs108|chr8                 (267 aa)
 initn: 1833 init1: 1833 opt: 1833  Z-score: 1997.4  bits: 377.3 E(32554): 6.2e-105
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KE6 MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVRPADINFLACVMECEGKLPSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVRPADINFLACVMECEGKLPSLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IWETCKELLQLSKPELPQDGTSTLRENSKPEESHLLAKRYGGFMKRYGGFMKKMDELYPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IWETCKELLQLSKPELPQDGTSTLRENSKPEESHLLAKRYGGFMKRYGGFMKKMDELYPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EPEEEANGSEILAKRYGGFMKKDAEEDDSLANSSDLLKELLETGDNRERSHHQDGSDNEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EPEEEANGSEILAKRYGGFMKKDAEEDDSLANSSDLLKELLETGDNRERSHHQDGSDNEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 EVSKRYGGFMRGLKRSPQLEDEAKELQKRYGGFMRRVGRPEWWMDYQKRYGGFLKRFAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EVSKRYGGFMRGLKRSPQLEDEAKELQKRYGGFMRRVGRPEWWMDYQKRYGGFLKRFAEA
              190       200       210       220       230       240

              250       260       
pF1KE6 LPSDEEGESYSKEVPEMEKRYGGFMRF
       :::::::::::::::::::::::::::
CCDS61 LPSDEEGESYSKEVPEMEKRYGGFMRF
              250       260       

>>CCDS13023.1 PDYN gene_id:5173|Hs108|chr20               (254 aa)
 initn: 326 init1: 102 opt: 330  Z-score: 367.2  bits: 75.6 E(32554): 3.9e-14
Smith-Waterman score: 330; 31.8% identity (57.3% similar) in 255 aa overlap (18-254:14-251)

               10        20        30         40        50         
pF1KE6 MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVR-PADINFLACVMECEGKL-PS
                        .. .. :.: . :. :. .    :  :: : : ..:.. : ::
CCDS13     MAWQGLVLAACLLMFPSTTADCLSRCSLCAVKTQDGPKPINPLICSLQCQAALLPS
                   10        20        30        40        50      

       60        70        80        90         100       110      
pF1KE6 LKIWETCKELLQLSKPELPQDGTSTLRENSKPE--ESHLLAKRYGGFMKRYGGFMKKMDE
        . :: :. .:..  :       :::  :.: .   . .    :. . :  :.:.:....
CCDS13 EE-WERCQSFLSFFTP-------STLGLNDKEDLGSKSVGEGPYSELAKLSGSFLKELEK
          60        70               80        90       100        

          120       130          140       150       160       170 
pF1KE6 --LYPMEPEEEANGSEILAKRYGGF---MKKDAEEDDSLANSSDLLKELLETGDNRERSH
         . :    .: . :. : ..  :.   ... :: .  :  ...:    .:::     . 
CCDS13 SKFLPSISTKENTLSKSLEEKLRGLSDGFREGAESE--LMRDAQLNDGAMETG-----TL
      110       120       130       140         150            160 

             180       190        200              210       220   
pF1KE6 HQDGSDNEEEVSKRYGGFMRGL-KRSPQLEDEA-------KELQKRYGGFMRRVGRPEWW
       .    : .:.: ::::::.:   ::: ..  :.       ..: ::::::.::. ::.  
CCDS13 YLAEEDPKEQV-KRYGGFLRKYPKRSSEVAGEGDGDSMGHEDLYKRYGGFLRRI-RPKLK
             170        180       190       200       210          

           230        240       250       260       
pF1KE6 MDYQKRYGGFLKR-FAEALPSDEEGESYSKEVPEMEKRYGGFMRF
        : ::::::::.: :  .  :.:. ..:: :.             
CCDS13 WDNQKRYGGFLRRQFKVVTRSQEDPNAYSGELFDA          
     220       230       240       250              




267 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:25:35 2016 done: Tue Nov  8 11:25:36 2016
 Total Scan time:  2.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]