FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6244, 278 aa
  1>>>pF1KE6244 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3597+/-0.00086; mu= 13.9938+/- 0.051
 mean_var=57.9973+/-11.924, 0's: 0 Z-trim(105.0): 25  B-trim: 0 in 0/50
 Lambda= 0.168411
 statistics sampled from 8195 (8208) to 8195 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.252), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS7003.1 AGPAT2 gene_id:10555|Hs108|chr9         ( 278) 1822 451.0 4.3e-127
CCDS35181.1 AGPAT2 gene_id:10555|Hs108|chr9        ( 246) 1092 273.6 9.5e-74
CCDS4744.1 AGPAT1 gene_id:10554|Hs108|chr6         ( 283)  832 210.5 1.1e-54


>>CCDS7003.1 AGPAT2 gene_id:10555|Hs108|chr9              (278 aa)
 initn: 1822 init1: 1822 opt: 1822  Z-score: 2395.2  bits: 451.0 E(32554): 4.3e-127
Smith-Waterman score: 1822; 99.6% identity (99.6% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KE6 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LLPFKKGAFYLAVQAQVPIFPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS70 LLPFKKGAFYLAVQAQVPIVPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD
              190       200       210       220       230       240

              250       260       270        
pF1KE6 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ
       ::::::::::::::::::::::::::::::::::::::
CCDS70 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ
              250       260       270        

>>CCDS35181.1 AGPAT2 gene_id:10555|Hs108|chr9             (246 aa)
 initn: 1106 init1: 1087 opt: 1092  Z-score: 1437.5  bits: 273.6 E(32554): 9.5e-74
Smith-Waterman score: 1527; 88.1% identity (88.1% similar) in 278 aa overlap (1-278:1-246)

               10        20        30        40        50        60
pF1KE6 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS35 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVREN----------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KE6 LLPFKKGAFYLAVQAQVPIFPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD
                       ::: ::::::::::::::::::::::::::::::::::::::::
CCDS35 ----------------VPIVPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD
                          170       180       190       200        

              250       260       270        
pF1KE6 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ
       ::::::::::::::::::::::::::::::::::::::
CCDS35 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ
      210       220       230       240      

>>CCDS4744.1 AGPAT1 gene_id:10554|Hs108|chr6              (283 aa)
 initn: 851 init1: 758 opt: 832  Z-score: 1095.1  bits: 210.5 E(32554): 1.1e-54
Smith-Waterman score: 832; 47.3% identity (76.0% similar) in 275 aa overlap (1-267:1-273)

               10        20                30        40        50  
pF1KE6 MELWPCLAAALLLLLLLVQL--------SRAAEFYAKVALYCALCFTVSAVASLVCLLRH
       :.:::     ::::.::. .        : .:... :.:.: .  . ....:  :: .: 
CCDS47 MDLWPGAWMLLLLLFLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVR-
               10        20        30        40        50          

             60        70        80        90       100       110  
pF1KE6 GGRTVENMSIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLP
        ::.::::.:.  ..  .::.::.: :::  ...  ..: :.:::::: ::..:.:::::
CCDS47 -GRNVENMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLP
       60        70        80        90       100       110        

            120       130       140       150       160       170  
pF1KE6 ERCVQIAKRELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPE
        ::: :::::::. : .::  .:.::.::.:.:.. :..::..... .. ....::..::
CCDS47 GRCVPIAKRELLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPE
      120       130       140       150       160       170        

            180       190       200       210       220       230  
pF1KE6 GTRNDNGDLLPFKKGAFYLAVQAQVPIFPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIP
       :::: ::..::::.:::.::::::::: :.:.::...::  :.. ::::   :.::  .:
CCDS47 GTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGQCQVRVLPPVP
      180       190       200       210       220       230        

            240       250       260       270        
pF1KE6 TSGLTAADVPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ
       : :::  :::::.:  ...: :.: .::   . .:           
CCDS47 TEGLTPDDVPALADRVRHSMLTVFREISTDGRGGGDYLKKPGGGG 
      240       250       260       270       280    




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:24:35 2016 done: Tue Nov  8 11:24:35 2016
 Total Scan time:  2.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]