FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6241, 276 aa
  1>>>pF1KE6241 276 - 276 aa - 276 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0489+/-0.000664; mu= 17.0898+/- 0.040
 mean_var=68.7591+/-13.681, 0's: 0 Z-trim(111.2): 10  B-trim: 0 in 0/49
 Lambda= 0.154671
 statistics sampled from 12156 (12163) to 12156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.374), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS11583.1 COX11 gene_id:1353|Hs108|chr17         ( 276) 1942 441.7 2.7e-124
CCDS82162.1 COX11 gene_id:1353|Hs108|chr17         ( 230) 1516 346.6 9.8e-96
CCDS58579.1 COX11 gene_id:1353|Hs108|chr17         ( 231) 1516 346.6 9.9e-96


>>CCDS11583.1 COX11 gene_id:1353|Hs108|chr17              (276 aa)
 initn: 1942 init1: 1942 opt: 1942  Z-score: 2344.8  bits: 441.7 E(32554): 2.7e-124
Smith-Waterman score: 1942; 99.6% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KE6 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID
              190       200       210       220       230       240

              250       260       270      
pF1KE6 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN
       ::::::::::::::::::::::::::::::::::::
CCDS11 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN
              250       260       270      

>>CCDS82162.1 COX11 gene_id:1353|Hs108|chr17              (230 aa)
 initn: 1516 init1: 1516 opt: 1516  Z-score: 1832.2  bits: 346.6 E(32554): 9.8e-96
Smith-Waterman score: 1516; 99.5% identity (100.0% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KE6 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID
       ::::::.:::::::::::::::::::::::::::::                        
CCDS82 ALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQVHQSVNFTEYDKDT          
              190       200       210       220       230          

              250       260       270      
pF1KE6 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN

>>CCDS58579.1 COX11 gene_id:1353|Hs108|chr17              (231 aa)
 initn: 1516 init1: 1516 opt: 1516  Z-score: 1832.2  bits: 346.6 E(32554): 9.9e-96
Smith-Waterman score: 1516; 99.5% identity (100.0% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KE6 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID
       ::::::.:::::::::::::::::::::::::::::                        
CCDS58 ALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQASKLHRVYVLESWHL         
              190       200       210       220       230          

              250       260       270      
pF1KE6 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN




276 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:22:59 2016 done: Tue Nov  8 11:22:59 2016
 Total Scan time:  2.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]