FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6227, 219 aa
  1>>>pF1KE6227 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1241+/-0.000976; mu= 14.6592+/- 0.058
 mean_var=64.7444+/-13.716, 0's: 0 Z-trim(104.0): 31  B-trim: 48 in 1/47
 Lambda= 0.159394
 statistics sampled from 7651 (7661) to 7651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.235), width:  16
 Scan time:  1.510

The best scores are:                                      opt bits E(32554)
CCDS4812.1 LHFPL5 gene_id:222662|Hs108|chr6        ( 219) 1489 351.2 3.1e-97
CCDS33691.1 LHFPL4 gene_id:375323|Hs108|chr3       ( 247)  994 237.4 6.2e-63
CCDS9369.1 LHFP gene_id:10186|Hs108|chr13          ( 200)  278 72.7 1.9e-13
CCDS4042.1 LHFPL2 gene_id:10184|Hs108|chr5         ( 228)  242 64.4 6.6e-11


>>CCDS4812.1 LHFPL5 gene_id:222662|Hs108|chr6             (219 aa)
 initn: 1489 init1: 1489 opt: 1489  Z-score: 1859.3  bits: 351.2 E(32554): 3.1e-97
Smith-Waterman score: 1489; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KE6 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM
              130       140       150       160       170       180

              190       200       210         
pF1KE6 LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV
       :::::::::::::::::::::::::::::::::::::::
CCDS48 LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV
              190       200       210         

>>CCDS33691.1 LHFPL4 gene_id:375323|Hs108|chr3            (247 aa)
 initn: 989 init1: 649 opt: 994  Z-score: 1243.3  bits: 237.4 E(32554): 6.2e-63
Smith-Waterman score: 994; 61.8% identity (84.8% similar) in 217 aa overlap (4-219:1-217)

               10        20        30        40        50        60
pF1KE6 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG
          .::.:::.:.:: .:.:::::.::.:. .::::... ...::::::.::::.::. :
CCDS33    MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPG
                  10        20        30        40        50       

               70         80        90       100       110         
pF1KE6 YFGLFSYCVGNVLSS-ELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFF
       ::::: ::::. :.. :: :.:.  :::.::: :::.: ::: :.: ::.: : ::::::
CCDS33 YFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFF
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KE6 ICNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAF
       .::::::::::::::: ::  :..::...:::::.  .: ::: .::::.:: :..:::.
CCDS33 FCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAY
       120       130       140       150       160       170       

     180       190       200       210                             
pF1KE6 MLAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV                    
       .:::..: .:::::::::::: ::  :: .. : .. . :                    
CCDS33 ILAIIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLRPGGDVSGWGVL
       180       190       200       210       220       230       

CCDS33 PCPVAHSQGP
       240       

>>CCDS9369.1 LHFP gene_id:10186|Hs108|chr13               (200 aa)
 initn: 275 init1: 182 opt: 278  Z-score: 354.8  bits: 72.7 E(32554): 1.9e-13
Smith-Waterman score: 282; 30.3% identity (60.5% similar) in 195 aa overlap (26-203:9-195)

               10        20        30         40        50         
pF1KE6 MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLT-ICFSVLVMALFIQPYWI-GDSVNTPQ
                                ::.:. :. .: ..  ...:. :::. :.... : 
CCDS93                  MASSLTCTGVIWALLSFLCAATSCVGFFM-PYWLWGSQLGKPV
                                10        20         30        40  

       60        70               80        90       100       110 
pF1KE6 AGYFGLFSYCVGNVL--SSELI-----CKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGS
       .  :: :  :   :   : ...     : :   .:..:::  ..   . ..::  :..  
CCDS93 S--FGTFRRCSYPVHDESRQMMVMVEEC-GRYASFQGIPSAEWRICTIVTGLGCGLLL--
               50        60         70        80        90         

             120            130       140         150       160    
pF1KE6 IICFSLFFICNTA-----TVYKICAWMQLAAATGLMIG--CLVYPDGWDSSEVRRMCGEQ
       .. .. .. : ..     :: .. . .:. .  ::.::  : .:: :::: :::. ::  
CCDS93 LVALTALMGCCVSDLISRTVGRVAGGIQFLG--GLLIGAGCALYPLGWDSEEVRQTCGYT
       100       110       120         130       140       150     

          170       180       190        200       210         
pF1KE6 TGKYTLGHCTIRWAFMLAILSIGDALIL-SFLAFVLGYRQDKLLPDDYKADGTEEV
       .:.. ::.: : ::.. .  .   :..: ..::   : .:                
CCDS93 SGQFDLGKCEIGWAYYCTGAGATAAMLLCTWLACFSGKKQKHYPY           
         160       170       180       190       200           

>>CCDS4042.1 LHFPL2 gene_id:10184|Hs108|chr5              (228 aa)
 initn: 147 init1: 130 opt: 242  Z-score: 309.2  bits: 64.4 E(32554): 6.6e-11
Smith-Waterman score: 242; 24.5% identity (56.5% similar) in 184 aa overlap (45-218:44-220)

           20        30        40        50        60        70    
pF1KE6 HTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFGLFSYCVGNV--
                                     ..:   : .   :    .:... :. :   
CCDS40 TLLSIVVAFAELIAFMSADWLIGKARSRGGVEPAGPGGGSPEPYHPTLGIYARCIRNPGV
            20        30        40        50        60        70   

               80          90       100       110       120        
pF1KE6 --LSSELICKGGPL--DFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTA----
         .. . .:  ::   .:. : :  .... .:.:.:.: :.  .   :.: .:  .    
CCDS40 QHFQRDTLC--GPYAESFGEIASGFWQATAIFLAVGIF-ILCMVALVSVFTMCVQSIMKK
            80          90       100        110       120       130

          130       140       150       160       170       180    
pF1KE6 TVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAIL
       .....:. .:  :.  :..: ..:: ::  ...  .::. .. :  : :.. :::. :: 
CCDS40 SIFNVCGLLQGIAGLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLGWAFYTAI-
              140       150       160       170       180          

          190       200       210                
pF1KE6 SIGDALILSFLAFVLGYRQDKLLPDDYKADGTEEV       
           . .:.:.  :.. . .    .:   .  ::        
CCDS40 ---GGTVLTFICAVFSAQAEIATSSDKVQEEIEEGKNLICLL
        190       200       210       220        




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:15:56 2016 done: Tue Nov  8 11:15:57 2016
 Total Scan time:  1.510 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]