FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6222, 230 aa
  1>>>pF1KE6222 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1817+/-0.000367; mu= 14.0785+/- 0.022
 mean_var=58.2499+/-12.237, 0's: 0 Z-trim(112.5): 19  B-trim: 37 in 1/51
 Lambda= 0.168045
 statistics sampled from 21506 (21508) to 21506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.252), width:  16
 Scan time:  5.850

The best scores are:                                      opt bits E(85289)
NP_006570 (OMIM: 300205,300960,302960) 3-beta-hydr ( 230) 1611 398.8 3.9e-111


>>NP_006570 (OMIM: 300205,300960,302960) 3-beta-hydroxys  (230 aa)
 initn: 1611 init1: 1611 opt: 1611  Z-score: 2116.2  bits: 398.8 E(85289): 3.9e-111
Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KE6 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
              130       140       150       160       170       180

              190       200       210       220       230
pF1KE6 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN
              190       200       210       220       230




230 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:13:20 2016 done: Tue Nov  8 11:13:20 2016
 Total Scan time:  5.850 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]