Result of FASTA (omim) for
pFN21AE6218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6218, 290 aa
1>>>pF1KE6218 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0622+/-0.000389; mu= 16.9789+/- 0.024
mean_var=66.5217+/-13.162, 0's: 0 Z-trim(111.7): 25 B-trim: 0 in 0/53
Lambda= 0.157251
statistics sampled from 20382 (20400) to 20382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.239), width: 16
Scan time: 4.610
The best scores are: opt bits E(85289)
XP_005266023 (OMIM: 601287,601411,606685) PREDICTE ( 290) 1891 437.9 1.1e-122
NP_000328 (OMIM: 601287,601411,606685) delta-sarco ( 290) 1891 437.9 1.1e-122
XP_016865212 (OMIM: 601287,601411,606685) PREDICTE ( 290) 1891 437.9 1.1e-122
XP_016865213 (OMIM: 601287,601411,606685) PREDICTE ( 290) 1891 437.9 1.1e-122
XP_011532923 (OMIM: 601287,601411,606685) PREDICTE ( 289) 1884 436.3 3.3e-122
NP_001121681 (OMIM: 601287,601411,606685) delta-sa ( 289) 1884 436.3 3.3e-122
NP_758447 (OMIM: 601287,601411,606685) delta-sarco ( 256) 1512 351.9 7.5e-97
NP_631906 (OMIM: 608113) zeta-sarcoglycan isoform ( 312) 1144 268.4 1.2e-71
XP_005266024 (OMIM: 601287,601411,606685) PREDICTE ( 175) 1088 255.6 5e-68
NP_000222 (OMIM: 253700,608896) gamma-sarcoglycan ( 291) 1031 242.8 5.9e-64
XP_005266562 (OMIM: 253700,608896) PREDICTED: gamm ( 291) 1029 242.3 8.1e-64
XP_006719924 (OMIM: 253700,608896) PREDICTED: gamm ( 309) 1029 242.4 8.5e-64
NP_001309808 (OMIM: 608113) zeta-sarcoglycan isofo ( 278) 692 165.9 8e-41
NP_001309809 (OMIM: 608113) zeta-sarcoglycan isofo ( 271) 527 128.4 1.5e-29
NP_001309810 (OMIM: 608113) zeta-sarcoglycan isofo ( 197) 504 123.1 4.2e-28
NP_000223 (OMIM: 600900,604286) beta-sarcoglycan [ ( 318) 198 53.8 4.9e-07
>>XP_005266023 (OMIM: 601287,601411,606685) PREDICTED: d (290 aa)
initn: 1891 init1: 1891 opt: 1891 Z-score: 2323.7 bits: 437.9 E(85289): 1.1e-122
Smith-Waterman score: 1891; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
250 260 270 280 290
>>NP_000328 (OMIM: 601287,601411,606685) delta-sarcoglyc (290 aa)
initn: 1891 init1: 1891 opt: 1891 Z-score: 2323.7 bits: 437.9 E(85289): 1.1e-122
Smith-Waterman score: 1891; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
250 260 270 280 290
>>XP_016865212 (OMIM: 601287,601411,606685) PREDICTED: d (290 aa)
initn: 1891 init1: 1891 opt: 1891 Z-score: 2323.7 bits: 437.9 E(85289): 1.1e-122
Smith-Waterman score: 1891; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
250 260 270 280 290
>>XP_016865213 (OMIM: 601287,601411,606685) PREDICTED: d (290 aa)
initn: 1891 init1: 1891 opt: 1891 Z-score: 2323.7 bits: 437.9 E(85289): 1.1e-122
Smith-Waterman score: 1891; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
250 260 270 280 290
>>XP_011532923 (OMIM: 601287,601411,606685) PREDICTED: d (289 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2315.1 bits: 436.3 E(85289): 3.3e-122
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 289 aa overlap (2-290:1-289)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
180 190 200 210 220 230
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
240 250 260 270 280
>>NP_001121681 (OMIM: 601287,601411,606685) delta-sarcog (289 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2315.1 bits: 436.3 E(85289): 3.3e-122
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 289 aa overlap (2-290:1-289)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
180 190 200 210 220 230
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
240 250 260 270 280
>>NP_758447 (OMIM: 601287,601411,606685) delta-sarcoglyc (256 aa)
initn: 1532 init1: 1512 opt: 1512 Z-score: 1859.7 bits: 351.9 E(85289): 7.5e-97
Smith-Waterman score: 1512; 99.1% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::..
NP_758 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRDEKDR
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
NP_758 SSKSYSFNRPTLPITG
250
>>NP_631906 (OMIM: 608113) zeta-sarcoglycan isoform 1 [H (312 aa)
initn: 940 init1: 524 opt: 1144 Z-score: 1407.3 bits: 268.4 E(85289): 1.2e-71
Smith-Waterman score: 1144; 57.2% identity (82.8% similar) in 297 aa overlap (2-290:14-310)
10 20 30 40
pF1KE6 MMPQEQY--THHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILI
: .::: . .....: . . :.: ::::::::::::::::::.. .
NP_631 MDRSTNLDIEELKMTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTM
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 LVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKS
.::::::::::::::::.:::::::.:.::..::: :::: :::.:::.:: . : ..:
NP_631 IVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 ARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVK-TVSGKLLFSADNNEVVVGAERLR
:::::: : . .. :: : :::: :.:::. . .:..:::::..:...:::.:.
NP_631 DRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLK
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 VLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTEL
: :.::.:: .:.:::..::.: ..::::::::::.::::.::...: ::...:::: ::
NP_631 VTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKEL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE6 RLESKDGEIKLDAAKIRLPRLPHGSYT---PTGT--RQKVFEICVCANGRLFLSQAGAGS
.:.: .::: :.: :.: :: ::.. :... :: :.:.::: ::.:.:: ::.::
NP_631 HLQSTEGEIFLNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGS
250 260 270 280 290 300
290
pF1KE6 TCQINTSVCL
::: ....::
NP_631 TCQSSSNICLWS
310
>>XP_005266024 (OMIM: 601287,601411,606685) PREDICTED: d (175 aa)
initn: 1088 init1: 1088 opt: 1088 Z-score: 1342.3 bits: 255.6 E(85289): 5e-68
Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGWSPQPGL
130 140 150 160 170
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
>>NP_000222 (OMIM: 253700,608896) gamma-sarcoglycan [Hom (291 aa)
initn: 1029 init1: 1029 opt: 1031 Z-score: 1269.2 bits: 242.8 E(85289): 5.9e-64
Smith-Waterman score: 1031; 52.9% identity (81.4% similar) in 291 aa overlap (2-290:1-291)
10 20 30 40 50
pF1KE6 MMPQEQYTHHRS--TMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILK
: .:::: . . :::.:::::::::::.:::::.:...::::.::::::
NP_000 MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILK
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 VMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQ
:: :. :::.: .:. ::.:::.:::: :::::::.:: ..: ..:..::::: :..
NP_000 VMWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 TKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSI
.: .: .::: ::. ...:.... .:: ::..:..:::::...::: : ::..: .:.
NP_000 GEVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 ETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDA
::: ::::::..:::::::::: :.::.::.:.:.::..:: . .. ..:.:: . :::
NP_000 ETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 AKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
. ::.: .:.. :.:. :...::::: .:.:.:: ::...::: .. .::
NP_000 ETVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLYLSVAGVSTTCQEHSHICL
240 250 260 270 280 290
290 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:11:03 2016 done: Tue Nov 8 11:11:04 2016
Total Scan time: 4.610 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]