Result of FASTA (ccds) for
pFN21AE6218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6218, 290 aa
1>>>pF1KE6218 290 - 290 aa - 290 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3253+/-0.000914; mu= 15.1161+/- 0.055
mean_var=63.2177+/-12.479, 0's: 0 Z-trim(104.6): 17 B-trim: 0 in 0/49
Lambda= 0.161308
statistics sampled from 7987 (7995) to 7987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.246), width: 16
Scan time: 2.000
The best scores are: opt bits E(32554)
CCDS47325.1 SGCD gene_id:6444|Hs108|chr5 ( 290) 1891 448.7 2.3e-126
CCDS47327.1 SGCD gene_id:6444|Hs108|chr5 ( 289) 1884 447.1 6.9e-126
CCDS47326.1 SGCD gene_id:6444|Hs108|chr5 ( 256) 1512 360.5 7.2e-100
CCDS5992.2 SGCZ gene_id:137868|Hs108|chr8 ( 312) 1144 274.9 5.1e-74
CCDS9299.1 SGCG gene_id:6445|Hs108|chr13 ( 291) 1029 248.1 5.5e-66
>>CCDS47325.1 SGCD gene_id:6444|Hs108|chr5 (290 aa)
initn: 1891 init1: 1891 opt: 1891 Z-score: 2382.3 bits: 448.7 E(32554): 2.3e-126
Smith-Waterman score: 1891; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
250 260 270 280 290
>>CCDS47327.1 SGCD gene_id:6444|Hs108|chr5 (289 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2373.5 bits: 447.1 E(32554): 6.9e-126
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 289 aa overlap (2-290:1-289)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
180 190 200 210 220 230
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
240 250 260 270 280
>>CCDS47326.1 SGCD gene_id:6444|Hs108|chr5 (256 aa)
initn: 1532 init1: 1512 opt: 1512 Z-score: 1906.5 bits: 360.5 E(32554): 7.2e-100
Smith-Waterman score: 1512; 99.1% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE6 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::..
CCDS47 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRDEKDR
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 IRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
CCDS47 SSKSYSFNRPTLPITG
250
>>CCDS5992.2 SGCZ gene_id:137868|Hs108|chr8 (312 aa)
initn: 940 init1: 524 opt: 1144 Z-score: 1442.3 bits: 274.9 E(32554): 5.1e-74
Smith-Waterman score: 1144; 57.2% identity (82.8% similar) in 297 aa overlap (2-290:14-310)
10 20 30 40
pF1KE6 MMPQEQY--THHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILI
: .::: . .....: . . :.: ::::::::::::::::::.. .
CCDS59 MDRSTNLDIEELKMTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTM
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 LVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKS
.::::::::::::::::.:::::::.:.::..::: :::: :::.:::.:: . : ..:
CCDS59 IVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 ARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVK-TVSGKLLFSADNNEVVVGAERLR
:::::: : . .. :: : :::: :.:::. . .:..:::::..:...:::.:.
CCDS59 DRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLK
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 VLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTEL
: :.::.:: .:.:::..::.: ..::::::::::.::::.::...: ::...:::: ::
CCDS59 VTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKEL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE6 RLESKDGEIKLDAAKIRLPRLPHGSYT---PTGT--RQKVFEICVCANGRLFLSQAGAGS
.:.: .::: :.: :.: :: ::.. :... :: :.:.::: ::.:.:: ::.::
CCDS59 HLQSTEGEIFLNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGS
250 260 270 280 290 300
290
pF1KE6 TCQINTSVCL
::: ....::
CCDS59 TCQSSSNICLWS
310
>>CCDS9299.1 SGCG gene_id:6445|Hs108|chr13 (291 aa)
initn: 1027 init1: 1027 opt: 1029 Z-score: 1298.1 bits: 248.1 E(32554): 5.5e-66
Smith-Waterman score: 1029; 52.9% identity (81.4% similar) in 291 aa overlap (2-290:1-291)
10 20 30 40 50
pF1KE6 MMPQEQYTHHRS--TMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILK
: .:::: . . :::.:::::::::::.:::::.:...::::.::::::
CCDS92 MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILK
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 VMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQ
:: :. :::.: .:. ::.:::.:::: :::::::.:: ..: ..:..::::: :..
CCDS92 VMWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 TKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSI
.: .: .::: ::. ...:.... .:: ::..:..:::::...::: : ::..: .:.
CCDS92 GEVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 ETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDA
::: ::::::..:::::::::: :.::.::.:.:.::..:: . .. ..:.:: . :::
CCDS92 ETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 AKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL
. ::.: .:.. :.:. :...::::: .:.:.:: ::...::: .. .::
CCDS92 ETVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLYLSVAGVSTTCQEHNHICL
240 250 260 270 280 290
290 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:11:03 2016 done: Tue Nov 8 11:11:03 2016
Total Scan time: 2.000 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]