FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6215, 265 aa
  1>>>pF1KE6215 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4336+/-0.000779; mu= 14.1091+/- 0.047
 mean_var=65.7715+/-13.143, 0's: 0 Z-trim(107.6): 6  B-trim: 3 in 1/49
 Lambda= 0.158145
 statistics sampled from 9674 (9680) to 9674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS7648.1 UROS gene_id:7390|Hs108|chr10           ( 265) 1743 406.2 1.2e-113
CCDS81522.1 UROS gene_id:7390|Hs108|chr10          ( 139)  862 205.1 2.2e-53


>>CCDS7648.1 UROS gene_id:7390|Hs108|chr10                (265 aa)
 initn: 1743 init1: 1743 opt: 1743  Z-score: 2153.9  bits: 406.2 E(32554): 1.2e-113
Smith-Waterman score: 1743; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KE6 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 NSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVS
              190       200       210       220       230       240

              250       260     
pF1KE6 CTAESPTPQALATGIRKALQPHGCC
       :::::::::::::::::::::::::
CCDS76 CTAESPTPQALATGIRKALQPHGCC
              250       260     

>>CCDS81522.1 UROS gene_id:7390|Hs108|chr10               (139 aa)
 initn: 876 init1: 862 opt: 862  Z-score: 1071.9  bits: 205.1 E(32554): 2.2e-53
Smith-Waterman score: 862; 99.2% identity (99.2% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE6 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNL
       ::::::::::: :                                               
CCDS81 NAEKLAEYICSSEEVKGIF                                         
              130                                                  




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:09:29 2016 done: Tue Nov  8 11:09:29 2016
 Total Scan time:  1.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]