FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6213, 201 aa
  1>>>pF1KE6213 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1751+/-0.00074; mu= 9.0931+/- 0.045
 mean_var=73.8290+/-14.733, 0's: 0 Z-trim(109.5): 43  B-trim: 162 in 2/50
 Lambda= 0.149266
 statistics sampled from 10863 (10902) to 10863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.335), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS5399.1 SNX10 gene_id:29887|Hs108|chr7          ( 201) 1365 302.6   1e-82
CCDS56470.1 SNX10 gene_id:29887|Hs108|chr7         ( 117)  769 174.2 2.7e-44
CCDS11526.1 SNX11 gene_id:29916|Hs108|chr17        ( 270)  604 138.8 2.9e-33
CCDS82152.1 SNX11 gene_id:29916|Hs108|chr17        ( 262)  588 135.4 3.1e-32


>>CCDS5399.1 SNX10 gene_id:29887|Hs108|chr7               (201 aa)
 initn: 1365 init1: 1365 opt: 1365  Z-score: 1598.5  bits: 302.6 E(32554): 1e-82
Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL
              130       140       150       160       170       180

              190       200 
pF1KE6 GHSSDDSSSHGCKVNTAPQES
       :::::::::::::::::::::
CCDS53 GHSSDDSSSHGCKVNTAPQES
              190       200 

>>CCDS56470.1 SNX10 gene_id:29887|Hs108|chr7              (117 aa)
 initn: 769 init1: 769 opt: 769  Z-score: 908.7  bits: 174.2 E(32554): 2.7e-44
Smith-Waterman score: 769; 100.0% identity (100.0% similar) in 117 aa overlap (85-201:1-117)

           60        70        80        90       100       110    
pF1KE6 REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSD
                                     ::::::::::::::::::::::::::::::
CCDS56                               MNNRQHVDQRRQGLEDFLRKVLQNALLLSD
                                             10        20        30

          120       130       140       150       160       170    
pF1KE6 SSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSE
               40        50        60        70        80        90

          180       190       200 
pF1KE6 SSSSGLGHSSDDSSSHGCKVNTAPQES
       :::::::::::::::::::::::::::
CCDS56 SSSSGLGHSSDDSSSHGCKVNTAPQES
              100       110       

>>CCDS11526.1 SNX11 gene_id:29916|Hs108|chr17             (270 aa)
 initn: 588 init1: 371 opt: 604  Z-score: 710.7  bits: 138.8 E(32554): 2.9e-33
Smith-Waterman score: 604; 54.3% identity (83.3% similar) in 162 aa overlap (1-162:7-167)

                     10        20        30        40        50    
pF1KE6       MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRY
             :  .:..:: ..: :.:::.:.:  :.::.::.: .::::  :: :::::::::
CCDS11 MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE6 REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSD
       :::::::..:: :: :: .::::.:. ::. .. . ...:::::. ::.::::...::::
CCDS11 REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSVVLLSD
               70        80        90        100       110         

          120       130       140       150       160       170    
pF1KE6 SSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSE
       :.:::::::.:.  .:::::.:.. ..: .:: ..:. :  . .:...            
CCDS11 SQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPK
     120       130       140       150       160       170         

          180       190       200                                  
pF1KE6 SSSSGLGHSSDDSSSHGCKVNTAPQES                                 
                                                                   
CCDS11 SCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKE
     180       190       200       210       220       230         

>>CCDS82152.1 SNX11 gene_id:29916|Hs108|chr17             (262 aa)
 initn: 572 init1: 355 opt: 588  Z-score: 692.3  bits: 135.4 E(32554): 3.1e-32
Smith-Waterman score: 588; 54.1% identity (84.1% similar) in 157 aa overlap (6-162:4-159)

               10        20        30        40        50        60
pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL
            ...: ..: :.:::.:.:  :.::.::.: .::::  :: :::::::::::::::
CCDS82   MVCREQEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF
       :..:: :: :: .::::.:. ::. .. . ...:::::. ::.::::...:::::.::::
CCDS82 RKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLF
       60        70        80         90       100       110       

              130       140       150       160       170       180
pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL
       :::.:.  .:::::.:.. ..: .:: ..:. :  . .:...                  
CCDS82 LQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKSCCFLP
       120       130       140       150       160       170       

              190       200                                        
pF1KE6 GHSSDDSSSHGCKVNTAPQES                                       
                                                                   
CCDS82 RSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEGTSTLQ
       180       190       200       210       220       230       




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:08:36 2016 done: Tue Nov  8 11:08:36 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]