Result of FASTA (omim) for
pFN21AE6210
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6210, 250 aa
1>>>pF1KE6210 250 - 250 aa - 250 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7754+/-0.000341; mu= 11.9977+/- 0.021
mean_var=80.5371+/-16.637, 0's: 0 Z-trim(116.3): 91 B-trim: 595 in 1/57
Lambda= 0.142915
statistics sampled from 27196 (27312) to 27196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.32), width: 16
Scan time: 6.910
The best scores are: opt bits E(85289)
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 1695 358.8 5.1e-99
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 955 206.3 4.4e-53
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 943 203.8 2.4e-52
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 940 203.2 3.8e-52
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 940 203.2 3.8e-52
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 940 203.2 3.8e-52
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 932 201.5 1.2e-51
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 810 176.3 3.7e-44
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 363 84.2 2.5e-16
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 273 65.7 9.5e-11
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 262 63.4 4.5e-10
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 262 63.4 4.7e-10
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 262 63.4 4.8e-10
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 258 62.5 7.3e-10
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 253 61.5 1.7e-09
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 251 61.1 1.9e-09
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 249 60.7 3e-09
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 249 60.7 3.1e-09
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 247 60.3 3.9e-09
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 244 59.7 6e-09
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 244 59.7 6.1e-09
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 244 59.7 6.2e-09
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 242 59.3 8.2e-09
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 233 57.4 3e-08
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 232 57.2 3.4e-08
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 208 52.3 1.1e-06
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 194 49.4 7.6e-06
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 194 49.4 9.2e-06
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 194 49.4 9.5e-06
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 194 49.4 9.7e-06
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 194 49.4 9.7e-06
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 190 48.5 1.3e-05
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 180 46.4 3.9e-05
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 46.7 4.7e-05
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 46.7 4.7e-05
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 181 46.7 4.7e-05
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 181 46.8 6e-05
NP_064455 (OMIM: 146770,613500) immunoglobulin lam ( 213) 178 46.0 6.4e-05
XP_011528471 (OMIM: 146770,613500) PREDICTED: immu ( 214) 178 46.0 6.4e-05
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 178 46.1 7.1e-05
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 172 44.8 0.00016
NP_001316086 (OMIM: 603889) signal-regulatory prot ( 398) 174 45.4 0.00019
NP_001129316 (OMIM: 603889) signal-regulatory prot ( 398) 174 45.4 0.00019
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 172 44.9 0.00021
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 172 44.9 0.00022
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 172 44.9 0.00022
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 170 44.4 0.00023
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 172 44.9 0.00025
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 170 44.5 0.00026
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 172 45.0 0.00026
>>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa)
initn: 1695 init1: 1695 opt: 1695 Z-score: 1898.7 bits: 358.8 E(85289): 5.1e-99
Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
190 200 210 220 230 240
250
pF1KE6 MGTYVSSVPR
::::::::::
NP_002 MGTYVSSVPR
250
>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa)
initn: 962 init1: 940 opt: 955 Z-score: 1074.0 bits: 206.3 E(85289): 4.4e-53
Smith-Waterman score: 955; 56.6% identity (79.3% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
: : .:.:: .: :..:: . :::..: : .:: :: :::.::::: .. : :
NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
::...:..:: :::. :. :::::.: ..:. : .:.:...: : . : : :.:::. :
NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
: : ::::: :::.::::::::.::::: :::.:::::..::: :. :: : :. :: :.
NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
:::...:::.::::::: :::.::: ..: : . ::.::::::..::.:..::::.::
NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
250
pF1KE6 MGTYVSSVPR
.:
NP_002 QGLRSVGASRHQGPL
250
>>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa)
initn: 1000 init1: 887 opt: 943 Z-score: 1060.7 bits: 203.8 E(85289): 2.4e-52
Smith-Waterman score: 943; 54.7% identity (78.9% similar) in 247 aa overlap (1-247:1-246)
10 20 30 40 50 60
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
::. . :::: . .:.: ::. : : .:. :: . ::.: .:: ...: :
NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHV-IIQAEFYLNPDQSGEFMFDFDGDEIFHV
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
:. :.:.:::: ::: :: :. ::.::.::. ::.:.:...::: . ::::.:::: .
NP_061 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
: ::: .::.:::..:.. :::.:.::::::. :: ::..: : . ::::::::::::.
NP_061 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
::.::::::.::::::: :::.:::...: : :.. :..::::::..::::...::..::
NP_061 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
180 190 200 210 220 230
250
pF1KE6 MGTYVSSVPR
: :.
NP_061 KGLRKSNAAERRGPL
240 250
>>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa)
initn: 935 init1: 879 opt: 940 Z-score: 1057.2 bits: 203.2 E(85289): 3.8e-52
Smith-Waterman score: 940; 56.5% identity (79.0% similar) in 248 aa overlap (3-250:10-255)
10 20 30 40 50
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD
.:: ..: .: ::: . ::: ::::...:. :: :.. .:.: :::
NP_291 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP
:...: ::: :.:.::.: :::. :. :::::.:: .. .:. :..:::...: : ::
NP_291 EDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK
.:::.:: ::::::: ::: .:..::::.:.::: ::. ::::::.. : . :. :.:
NP_291 EVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL
:::: ::::::: :::.::::::: :::.::: : :: :.. ::..:::::..::::..
NP_291 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII
180 190 200 210 220 230
240 250
pF1KE6 VGTVLIIMGTYVSSVPR
::::::: . . ::
NP_291 VGTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 935 init1: 879 opt: 940 Z-score: 1057.2 bits: 203.2 E(85289): 3.8e-52
Smith-Waterman score: 940; 56.5% identity (79.0% similar) in 248 aa overlap (3-250:10-255)
10 20 30 40 50
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD
.:: ..: .: ::: . ::: ::::...:. :: :.. .:.: :::
NP_001 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP
:...: ::: :.:.::.: :::. :. :::::.:: .. .:. :..:::...: : ::
NP_001 EDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK
.:::.:: ::::::: ::: .:..::::.:.::: ::. ::::::.. : . :. :.:
NP_001 EVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL
:::: ::::::: :::.::::::: :::.::: : :: :.. ::..:::::..::::..
NP_001 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII
180 190 200 210 220 230
240 250
pF1KE6 VGTVLIIMGTYVSSVPR
::::::: . . ::
NP_001 VGTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 935 init1: 879 opt: 940 Z-score: 1057.2 bits: 203.2 E(85289): 3.8e-52
Smith-Waterman score: 940; 56.5% identity (79.0% similar) in 248 aa overlap (3-250:10-255)
10 20 30 40 50
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD
.:: ..: .: ::: . ::: ::::...:. :: :.. .:.: :::
NP_001 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP
:...: ::: :.:.::.: :::. :. :::::.:: .. .:. :..:::...: : ::
NP_001 EDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK
.:::.:: ::::::: ::: .:..::::.:.::: ::. ::::::.. : . :. :.:
NP_001 EVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL
:::: ::::::: :::.::::::: :::.::: : :: :.. ::..:::::..::::..
NP_001 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII
180 190 200 210 220 230
240 250
pF1KE6 VGTVLIIMGTYVSSVPR
::::::: . . ::
NP_001 VGTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa)
initn: 940 init1: 917 opt: 932 Z-score: 1048.4 bits: 201.5 E(85289): 1.2e-51
Smith-Waterman score: 932; 55.8% identity (78.9% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
: : .:.:: .: ...:: . :::..::: ::::.: :::.::::: .. : :
NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
::. .:.::.:: :. : ::::..: ..:. : :......:: . : : :.:::. :
NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
: ::::: :::.::::::::.::::: ::..:::::..::: :. :: : :. :: :.
NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
:::...:::.::::::: :::.::: ..: : . :::::::::..::.:..::::.::
NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
250
pF1KE6 MGTYVSSVPR
.:
NP_064 QGLRSVGASRHQGLL
250
>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa)
initn: 810 init1: 810 opt: 810 Z-score: 913.8 bits: 176.3 E(85289): 3.7e-44
Smith-Waterman score: 810; 56.9% identity (78.4% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
: : .:.:: .: :..:: . :::..: : .:: :: :::.::::: .. : :
XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
::...:..:: :::. :. :::::.: ..:. : .:.:...: : . : : :.:::. :
XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
: : ::::: :::.::::::::.::::: :::.:::::..::: :. :: : :. :: :.
XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
:::...:::.::::::: :::.::
XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE
190 200
>>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa)
initn: 262 init1: 102 opt: 363 Z-score: 414.2 bits: 84.2 E(85289): 2.5e-16
Smith-Waterman score: 363; 32.2% identity (63.0% similar) in 211 aa overlap (38-240:49-252)
10 20 30 40 50 60
pF1KE6 VLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSEA
. :. . : ... .::.::: :....
NP_006 WLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTR
20 30 40 50 60 70
70 80 90 100 110 120
pF1KE6 VWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVP-----PRVTVLPKSR
: :::::.:.:. :: .: : . .... . . ..: : . :. .
NP_006 VPRLPEFADWAQ--EQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKP
80 90 100 110 120 130
130 140 150 160 170 180
pF1KE6 VELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL-FRKFHYLPFVP
.:.:.:: :.:.:.:.:::.....: ... : :: . : : : : : :. : :: :.:
NP_006 LEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTP
140 150 160 170 180 190
190 200 210 220 230
pF1KE6 SAEDVYDCQVEHWGLDAPLLRHWELQVP--IPPPDAMETLVCALGLAIGLVGFLVGTVLI
:...: : : . .: :: : : .:...:......:..:..:: :::
NP_006 EPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLI
200 210 220 230 240 250
240 250
pF1KE6 IMGTYVSSVPR
:
NP_006 IYFRKPCSGD
260
>>NP_002112 (OMIM: 142858) HLA class II histocompatibili (258 aa)
initn: 323 init1: 253 opt: 273 Z-score: 314.0 bits: 65.7 E(85289): 9.5e-11
Smith-Waterman score: 273; 35.9% identity (64.1% similar) in 128 aa overlap (111-238:122-246)
90 100 110 120 130 140
pF1KE6 DPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPKSRVELGQPNILICIVDNIFP
: :::.: :... : . :.:.: : ...:
NP_002 KDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYP
100 110 120 130 140 150
150 160 170 180 190 200
pF1KE6 PVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFVPSAEDVYDCQVEHWGLDAPL
:.. :. ::: : ::..:.. . : :. . .: ..:. ::: ::::: .::.:.
NP_002 GSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPV
160 170 180 190 200 210
210 220 230 240 250
pF1KE6 LRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLIIMGTYVSSVPR
.:. : .::. : :...::. :: .
NP_002 TVEWKAQ---SDSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA
220 230 240 250
250 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:06:58 2016 done: Tue Nov 8 11:06:59 2016
Total Scan time: 6.910 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]