FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6196, 100 aa
  1>>>pF1KE6196 100 - 100 aa - 100 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4259+/-0.000571; mu= 8.3178+/- 0.034
 mean_var=49.8619+/-10.024, 0's: 0 Z-trim(110.8): 4  B-trim: 0 in 0/49
 Lambda= 0.181631
 statistics sampled from 11859 (11861) to 11859 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.364), width:  16
 Scan time:  1.160

The best scores are:                                      opt bits E(32554)
CCDS54534.1 ATP5L2 gene_id:267020|Hs108|chr22      ( 100)  631 172.2 4.7e-44
CCDS8397.1 ATP5L gene_id:10632|Hs108|chr11         ( 103)  558 153.1 2.8e-38


>>CCDS54534.1 ATP5L2 gene_id:267020|Hs108|chr22           (100 aa)
 initn: 631 init1: 631 opt: 631  Z-score: 904.3  bits: 172.2 E(32554): 4.7e-44
Smith-Waterman score: 631; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE6 MAPFVRNLVEKTPALVNAAVTYLKPRLAAFWYYTTVELVPPTPAEIPRAIQSLKKIVSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAPFVRNLVEKTPALVNAAVTYLKPRLAAFWYYTTVELVPPTPAEIPRAIQSLKKIVSSA
               10        20        30        40        50        60

               70        80        90       100
pF1KE6 QTGSFKQLTVKEALLNGLVATEVSTWFYVREITGKRGIIG
       ::::::::::::::::::::::::::::::::::::::::
CCDS54 QTGSFKQLTVKEALLNGLVATEVSTWFYVREITGKRGIIG
               70        80        90       100

>>CCDS8397.1 ATP5L gene_id:10632|Hs108|chr11              (103 aa)
 initn: 558 init1: 558 opt: 558  Z-score: 800.7  bits: 153.1 E(32554): 2.8e-38
Smith-Waterman score: 558; 89.0% identity (93.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE6 MAPFVRNLVEKTPALVNAAVTYLKPRLAAFWYYTTVELVPPTPAEIPRAIQSLKKIVSSA
       :: ::::::::::::::::::: :::::.::::. ::::::::::::::::::::::.::
CCDS83 MAQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSA
               10        20        30        40        50        60

               70        80        90       100   
pF1KE6 QTGSFKQLTVKEALLNGLVATEVSTWFYVREITGKRGIIG   
       :::::::::::::.:::::::::  :::: :: :::::::   
CCDS83 QTGSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV
               70        80        90       100   




100 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:15:36 2016 done: Tue Nov  8 10:15:36 2016
 Total Scan time:  1.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]