Result of FASTA (omim) for
pFN21AE6188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6188, 167 aa
1>>>pF1KE6188 167 - 167 aa - 167 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2333+/-0.000401; mu= 12.1887+/- 0.024
mean_var=61.2035+/-12.456, 0's: 0 Z-trim(112.2): 16 B-trim: 75 in 1/49
Lambda= 0.163940
statistics sampled from 20985 (21000) to 20985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.246), width: 16
Scan time: 3.440
The best scores are: opt bits E(85289)
NP_001116311 (OMIM: 613683) sugar transporter SWEE ( 167) 1131 275.9 2.1e-74
XP_006711516 (OMIM: 613683) PREDICTED: sugar trans ( 191) 624 156.0 2.9e-38
NP_061333 (OMIM: 613683) sugar transporter SWEET1 ( 221) 624 156.0 3.3e-38
NP_001274521 (OMIM: 613683) sugar transporter SWEE ( 103) 513 129.6 1.4e-30
NP_001274518 (OMIM: 613683) sugar transporter SWEE ( 112) 513 129.7 1.5e-30
NP_001274519 (OMIM: 613683) sugar transporter SWEE ( 156) 514 130.0 1.7e-30
NP_001116309 (OMIM: 613683) sugar transporter SWEE ( 166) 514 130.0 1.8e-30
NP_001274515 (OMIM: 613683) sugar transporter SWEE ( 175) 514 130.0 1.9e-30
NP_001274520 (OMIM: 613683) sugar transporter SWEE ( 183) 514 130.0 1.9e-30
XP_005245398 (OMIM: 613683) PREDICTED: sugar trans ( 189) 514 130.0 2e-30
XP_005245399 (OMIM: 613683) PREDICTED: sugar trans ( 189) 514 130.0 2e-30
XP_005245397 (OMIM: 613683) PREDICTED: sugar trans ( 204) 514 130.0 2.1e-30
XP_005245396 (OMIM: 613683) PREDICTED: sugar trans ( 205) 514 130.0 2.1e-30
NP_001274516 (OMIM: 613683) sugar transporter SWEE ( 214) 514 130.0 2.2e-30
NP_001274517 (OMIM: 613683) sugar transporter SWEE ( 136) 269 72.0 4.1e-13
>>NP_001116311 (OMIM: 613683) sugar transporter SWEET1 i (167 aa)
initn: 1131 init1: 1131 opt: 1131 Z-score: 1456.8 bits: 275.9 E(85289): 2.1e-74
Smith-Waterman score: 1131; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE6 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSAS
70 80 90 100 110 120
130 140 150 160
pF1KE6 WCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
130 140 150 160
>>XP_006711516 (OMIM: 613683) PREDICTED: sugar transport (191 aa)
initn: 635 init1: 620 opt: 624 Z-score: 807.8 bits: 156.0 E(85289): 2.9e-38
Smith-Waterman score: 768; 71.3% identity (71.3% similar) in 188 aa overlap (1-134:1-188)
10 20 30 40 50 60
pF1KE6 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
10 20 30 40 50 60
70 80 90
pF1KE6 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRK--------------------------
::::::::::::::::::::::::::::::::::
XP_006 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVP
70 80 90 100 110 120
100 110 120
pF1KE6 ----------------------------AKVIQTKSTQCLSYPLTIATLLTSASWCLYGF
::::::::::::::::::::::::::::::::
XP_006 NPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGF
130 140 150 160 170 180
130 140 150 160
pF1KE6 RLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
::::::::
XP_006 RLRDPYIMQFL
190
>>NP_061333 (OMIM: 613683) sugar transporter SWEET1 isof (221 aa)
initn: 635 init1: 620 opt: 624 Z-score: 806.9 bits: 156.0 E(85289): 3.3e-38
Smith-Waterman score: 839; 72.9% identity (72.9% similar) in 199 aa overlap (1-145:1-199)
10 20 30 40 50 60
pF1KE6 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSY
10 20 30 40 50 60
70 80 90
pF1KE6 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRK--------------------------
::::::::::::::::::::::::::::::::::
NP_061 GALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVP
70 80 90 100 110 120
100 110 120
pF1KE6 ----------------------------AKVIQTKSTQCLSYPLTIATLLTSASWCLYGF
::::::::::::::::::::::::::::::::
NP_061 NPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGF
130 140 150 160 170 180
130 140 150 160
pF1KE6 RLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
:::::::::::::::::::
NP_061 RLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
190 200 210 220
>>NP_001274521 (OMIM: 613683) sugar transporter SWEET1 i (103 aa)
initn: 513 init1: 513 opt: 513 Z-score: 670.1 bits: 129.6 E(85289): 1.4e-30
Smith-Waterman score: 513; 98.6% identity (100.0% similar) in 74 aa overlap (94-167:30-103)
70 80 90 100 110 120
pF1KE6 KGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSASWCL
.:::::::::::::::::::::::::::::
NP_001 MIQGLGPQAHANDPECGQRPVPALSHHGSQAKVIQTKSTQCLSYPLTIATLLTSASWCL
10 20 30 40 50
130 140 150 160
pF1KE6 YGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
60 70 80 90 100
>>NP_001274518 (OMIM: 613683) sugar transporter SWEET1 i (112 aa)
initn: 513 init1: 513 opt: 513 Z-score: 669.5 bits: 129.7 E(85289): 1.5e-30
Smith-Waterman score: 513; 98.6% identity (100.0% similar) in 74 aa overlap (94-167:39-112)
70 80 90 100 110 120
pF1KE6 KGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSASWCL
.:::::::::::::::::::::::::::::
NP_001 VLRRPLGPQAHANDPECGQRPVPALSHHGSQAKVIQTKSTQCLSYPLTIATLLTSASWCL
10 20 30 40 50 60
130 140 150 160
pF1KE6 YGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
70 80 90 100 110
>>NP_001274519 (OMIM: 613683) sugar transporter SWEET1 i (156 aa)
initn: 513 init1: 513 opt: 514 Z-score: 668.6 bits: 130.0 E(85289): 1.7e-30
Smith-Waterman score: 514; 82.8% identity (87.1% similar) in 93 aa overlap (75-167:64-156)
50 60 70 80 90 100
pF1KE6 LPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQ
.: ... : :: ::::::::::
NP_001 LQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQ
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE6 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
100 110 120 130 140 150
pF1KE6 LQT
:::
NP_001 LQT
>>NP_001116309 (OMIM: 613683) sugar transporter SWEET1 i (166 aa)
initn: 513 init1: 513 opt: 514 Z-score: 668.2 bits: 130.0 E(85289): 1.8e-30
Smith-Waterman score: 514; 82.8% identity (87.1% similar) in 93 aa overlap (75-167:74-166)
50 60 70 80 90 100
pF1KE6 LPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQ
.: ... : :: ::::::::::
NP_001 LQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQ
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE6 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWL
110 120 130 140 150 160
pF1KE6 LQT
:::
NP_001 LQT
>>NP_001274515 (OMIM: 613683) sugar transporter SWEET1 i (175 aa)
initn: 513 init1: 513 opt: 514 Z-score: 667.8 bits: 130.0 E(85289): 1.9e-30
Smith-Waterman score: 666; 67.9% identity (67.9% similar) in 168 aa overlap (54-167:8-175)
30 40 50 60 70 80
pF1KE6 SAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLY
::::::::::::::::::::::::::::::
NP_001 MRGLHPCNLGWLSYGALKGDGILIVVNTVGAALQTLY
10 20 30
90
pF1KE6 ILAYLHYCPRK-------------------------------------------------
:::::::::::
NP_001 ILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLS
40 50 60 70 80 90
100 110 120 130 140
pF1KE6 -----AKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFW
100 110 120 130 140 150
150 160
pF1KE6 LFWKYPQEQDRNYWLLQT
::::::::::::::::::
NP_001 LFWKYPQEQDRNYWLLQT
160 170
>>NP_001274520 (OMIM: 613683) sugar transporter SWEET1 i (183 aa)
initn: 513 init1: 513 opt: 514 Z-score: 667.5 bits: 130.0 E(85289): 1.9e-30
Smith-Waterman score: 812; 73.8% identity (73.8% similar) in 183 aa overlap (33-167:1-183)
10 20 30 40 50 60
pF1KE6 AGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGA
::::::::::::::::::::::::::::::
NP_001 MRMTRSVDNVQFLPFLTTEVNNLGWLSYGA
10 20 30
70 80 90
pF1KE6 LKGDGILIVVNTVGAALQTLYILAYLHYCPRK----------------------------
::::::::::::::::::::::::::::::::
NP_001 LKGDGILIVVNTVGAALQTLYILAYLHYCPRKTATLLGVLLLGYGYFWLLVPNPEARLQQ
40 50 60 70 80 90
100 110 120 130
pF1KE6 --------------------AKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIM
::::::::::::::::::::::::::::::::::::::::
NP_001 LGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIM
100 110 120 130 140 150
140 150 160
pF1KE6 VSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
:::::::::::::::::::::::::::::::::
NP_001 VSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
160 170 180
>>XP_005245398 (OMIM: 613683) PREDICTED: sugar transport (189 aa)
initn: 513 init1: 513 opt: 514 Z-score: 667.3 bits: 130.0 E(85289): 2e-30
Smith-Waterman score: 800; 71.4% identity (71.4% similar) in 189 aa overlap (33-167:1-189)
10 20 30 40 50 60
pF1KE6 AGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGA
::::::::::::::::::::::::::::::
XP_005 MRMTRSVDNVQFLPFLTTEVNNLGWLSYGA
10 20 30
70 80 90
pF1KE6 LKGDGILIVVNTVGAALQTLYILAYLHYCPRK----------------------------
::::::::::::::::::::::::::::::::
XP_005 LKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNP
40 50 60 70 80 90
100 110 120
pF1KE6 --------------------------AKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRL
::::::::::::::::::::::::::::::::::
XP_005 EARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRL
100 110 120 130 140 150
130 140 150 160
pF1KE6 RDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
:::::::::::::::::::::::::::::::::::::::
XP_005 RDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
160 170 180
167 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:11:24 2016 done: Tue Nov 8 10:11:25 2016
Total Scan time: 3.440 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]