Result of FASTA (omim) for
pFN21AE6182
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6182, 142 aa
1>>>pF1KE6182 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3887+/-0.00036; mu= 11.2273+/- 0.022
mean_var=64.2577+/-13.301, 0's: 0 Z-trim(113.5): 32 B-trim: 59 in 1/52
Lambda= 0.159997
statistics sampled from 22899 (22931) to 22899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.269), width: 16
Scan time: 4.770
The best scores are: opt bits E(85289)
NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142) 896 215.1 3.1e-56
NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142) 896 215.1 3.1e-56
NP_001177258 (OMIM: 602736) ATP synthase F(0) comp ( 105) 660 160.6 5.9e-40
NP_001317198 (OMIM: 603193) ATP synthase F(0) comp ( 141) 638 155.5 2.6e-38
XP_016874950 (OMIM: 603193) PREDICTED: ATP synthas ( 157) 638 155.6 2.8e-38
NP_001002031 (OMIM: 603193) ATP synthase F(0) comp ( 157) 638 155.6 2.8e-38
NP_005167 (OMIM: 603193) ATP synthase F(0) complex ( 198) 638 155.6 3.5e-38
XP_016874949 (OMIM: 603193) PREDICTED: ATP synthas ( 198) 638 155.6 3.5e-38
NP_001002027 (OMIM: 603192) ATP synthase F(0) comp ( 136) 586 143.5 1e-34
NP_005166 (OMIM: 603192) ATP synthase F(0) complex ( 136) 586 143.5 1e-34
>>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex (142 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1130.7 bits: 215.1 E(85289): 3.1e-56
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
130 140
>>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub (142 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1130.7 bits: 215.1 E(85289): 3.1e-56
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
130 140
>>NP_001177258 (OMIM: 602736) ATP synthase F(0) complex (105 aa)
initn: 660 init1: 660 opt: 660 Z-score: 838.3 bits: 160.6 E(85289): 5.9e-40
Smith-Waterman score: 660; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
>>NP_001317198 (OMIM: 603193) ATP synthase F(0) complex (141 aa)
initn: 645 init1: 525 opt: 638 Z-score: 808.9 bits: 155.5 E(85289): 2.6e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:1-141)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: :
NP_001 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
120 130 140
>>XP_016874950 (OMIM: 603193) PREDICTED: ATP synthase F( (157 aa)
initn: 645 init1: 525 opt: 638 Z-score: 808.1 bits: 155.6 E(85289): 2.8e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:17-157)
10 20 30 40
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV
::::.:.. ::::... :.. ::.:: ::.::: : :. .
XP_016 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSS
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA
. . .: . .: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA
60 70 80 90 100 110
110 120 130 140
pF1KE6 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::::::::::::::::::
XP_016 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
120 130 140 150
>>NP_001002031 (OMIM: 603193) ATP synthase F(0) complex (157 aa)
initn: 645 init1: 525 opt: 638 Z-score: 808.1 bits: 155.6 E(85289): 2.8e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:17-157)
10 20 30 40
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV
::::.:.. ::::... :.. ::.:: ::.::: : :. .
NP_001 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSS
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA
. . .: . .: :::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA
60 70 80 90 100 110
110 120 130 140
pF1KE6 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::::::::::::::::::
NP_001 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
120 130 140 150
>>NP_005167 (OMIM: 603193) ATP synthase F(0) complex sub (198 aa)
initn: 645 init1: 525 opt: 638 Z-score: 806.6 bits: 155.6 E(85289): 3.5e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:58-198)
10 20 30
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVL
::::.:.. ::::... :.. ::.:: ::
NP_005 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE6 SRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGA
.::: : :. . . . .: . .: :::::::::::::::::::::::::::::::
NP_005 KRPEIL-TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGA
90 100 110 120 130 140
100 110 120 130 140
pF1KE6 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
150 160 170 180 190
>>XP_016874949 (OMIM: 603193) PREDICTED: ATP synthase F( (198 aa)
initn: 645 init1: 525 opt: 638 Z-score: 806.6 bits: 155.6 E(85289): 3.5e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-142:58-198)
10 20 30
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVL
::::.:.. ::::... :.. ::.:: ::
XP_016 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE6 SRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGA
.::: : :. . . . .: . .: :::::::::::::::::::::::::::::::
XP_016 KRPEIL-TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGA
90 100 110 120 130 140
100 110 120 130 140
pF1KE6 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
150 160 170 180 190
>>NP_001002027 (OMIM: 603192) ATP synthase F(0) complex (136 aa)
initn: 603 init1: 533 opt: 586 Z-score: 744.2 bits: 143.5 E(85289): 1e-34
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-142:1-136)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
NP_001 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
120 130
>>NP_005166 (OMIM: 603192) ATP synthase F(0) complex sub (136 aa)
initn: 603 init1: 533 opt: 586 Z-score: 744.2 bits: 143.5 E(85289): 1e-34
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-142:1-136)
10 20 30 40 50 60
pF1KE6 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
NP_005 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_005 FALSEAMGLFCLMVAFLILFAM
120 130
142 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:09:29 2016 done: Tue Nov 8 10:09:30 2016
Total Scan time: 4.770 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]