FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6181, 125 aa
  1>>>pF1KE6181 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7155+/-0.000253; mu= 14.1903+/- 0.016
 mean_var=61.8708+/-12.530, 0's: 0 Z-trim(121.3): 8  B-trim: 117 in 1/50
 Lambda= 0.163054
 statistics sampled from 37776 (37784) to 37776 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.443), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(85289)
NP_001013003 (OMIM: 614772,616501) cytochrome c ox ( 125)  895 217.8 3.7e-57
NP_001193570 (OMIM: 614772,616501) cytochrome c ox ( 155)  600 148.5 3.4e-36
NP_001288662 (OMIM: 614772,616501) cytochrome c ox (  79)  562 139.3 9.8e-34


>>NP_001013003 (OMIM: 614772,616501) cytochrome c oxidas  (125 aa)
 initn: 895 init1: 895 opt: 895  Z-score: 1147.2  bits: 217.8 E(85289): 3.7e-57
Smith-Waterman score: 895; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE6 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE
               70        80        90       100       110       120

            
pF1KE6 TTAKS
       :::::
NP_001 TTAKS
            

>>NP_001193570 (OMIM: 614772,616501) cytochrome c oxidas  (155 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 770.9  bits: 148.5 E(85289): 3.4e-36
Smith-Waterman score: 600; 98.9% identity (98.9% similar) in 87 aa overlap (39-125:69-155)

       10        20        30        40        50        60        
pF1KE6 SPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKC
                                     : ::::::::::::::::::::::::::::
NP_001 RTRHRALHRRLVACVTVSSRRHRKEAGRGRAESFIAVGMAAPSMKERQVCWGARDEYWKC
       40        50        60        70        80        90        

       70        80        90       100       110       120     
pF1KE6 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
      100       110       120       130       140       150     

>>NP_001288662 (OMIM: 614772,616501) cytochrome c oxidas  (79 aa)
 initn: 562 init1: 562 opt: 562  Z-score: 726.6  bits: 139.3 E(85289): 9.8e-34
Smith-Waterman score: 562; 100.0% identity (100.0% similar) in 79 aa overlap (47-125:1-79)

         20        30        40        50        60        70      
pF1KE6 CKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKCLDENLEDA
                                     ::::::::::::::::::::::::::::::
NP_001                               MAAPSMKERQVCWGARDEYWKCLDENLEDA
                                             10        20        30

         80        90       100       110       120     
pF1KE6 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS
               40        50        60        70         




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:08:51 2016 done: Tue Nov  8 10:08:51 2016
 Total Scan time:  3.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]