FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6178, 118 aa
  1>>>pF1KE6178 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2554+/-0.000358; mu= -2.4802+/- 0.022
 mean_var=170.1427+/-33.672, 0's: 0 Z-trim(119.7): 24  B-trim: 792 in 1/55
 Lambda= 0.098326
 statistics sampled from 33990 (34019) to 33990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.399), width:  16
 Scan time:  3.890

The best scores are:                                      opt bits E(85289)
NP_569730 (OMIM: 606853) V-type proton ATPase subu ( 118)  753 117.5   5e-27
NP_612139 (OMIM: 606853) V-type proton ATPase subu (  77)  506 82.4 1.3e-16
NP_004879 (OMIM: 607296) V-type proton ATPase subu ( 118)  497 81.2 4.3e-16
NP_001191007 (OMIM: 606853) V-type proton ATPase s (  78)  296 52.6 1.2e-07


>>NP_569730 (OMIM: 606853) V-type proton ATPase subunit   (118 aa)
 initn: 753 init1: 753 opt: 753  Z-score: 606.2  bits: 117.5 E(85289): 5e-27
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE6 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_569 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE6 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_569 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
               70        80        90       100       110        

>>NP_612139 (OMIM: 606853) V-type proton ATPase subunit   (77 aa)
 initn: 506 init1: 506 opt: 506  Z-score: 419.5  bits: 82.4 E(85289): 1.3e-16
Smith-Waterman score: 506; 100.0% identity (100.0% similar) in 77 aa overlap (42-118:1-77)

              20        30        40        50        60        70 
pF1KE6 LQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQAAMGSQGNLSA
                                     ::::::::::::::::::::::::::::::
NP_612                               MEVEQYRREREHEFQSKQQAAMGSQGNLSA
                                             10        20        30

              80        90       100       110        
pF1KE6 EVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_612 EVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
               40        50        60        70       

>>NP_004879 (OMIM: 607296) V-type proton ATPase subunit   (118 aa)
 initn: 546 init1: 497 opt: 497  Z-score: 409.9  bits: 81.2 E(85289): 4.3e-16
Smith-Waterman score: 497; 64.1% identity (89.7% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE6 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ
       ::::::::::::::::::::::..::::: ::::::::::: :.:::: .::.::..:. 
NP_004 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE6 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
       ::.::.:. :.:::. :....  .:.  ..::..:: .::..:::.::..: ::::. 
NP_004 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING
               70        80        90       100       110        

>>NP_001191007 (OMIM: 606853) V-type proton ATPase subun  (78 aa)
 initn: 296 init1: 296 opt: 296  Z-score: 258.4  bits: 52.6 E(85289): 1.2e-07
Smith-Waterman score: 409; 66.1% identity (66.1% similar) in 118 aa overlap (1-118:1-78)

               10        20        30        40        50        60
pF1KE6 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ
       ::::::::::::::::::::::::::::::::::::                        
NP_001 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQA------------------------
               10        20        30                              

               70        80        90       100       110        
pF1KE6 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
                       ::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------------TRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA
                         40        50        60        70        




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:07:13 2016 done: Tue Nov  8 10:07:14 2016
 Total Scan time:  3.890 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]