FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6174, 91 aa
  1>>>pF1KE6174 91 - 91 aa - 91 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3939+/-0.000559; mu= 4.8515+/- 0.034
 mean_var=94.9123+/-18.551, 0's: 0 Z-trim(115.5): 2  B-trim: 0 in 0/53
 Lambda= 0.131648
 statistics sampled from 16084 (16086) to 16084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.494), width:  16
 Scan time:  1.030

The best scores are:                                      opt bits E(32554)
CCDS30704.1 UQCRH gene_id:7388|Hs108|chr1          (  91)  614 125.1   6e-30
CCDS76112.1 UQCRHL gene_id:440567|Hs108|chr1       (  91)  587 120.0 2.1e-28


>>CCDS30704.1 UQCRH gene_id:7388|Hs108|chr1               (91 aa)
 initn: 614 init1: 614 opt: 614  Z-score: 651.2  bits: 125.1 E(32554): 6e-30
Smith-Waterman score: 614; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
               10        20        30        40        50        60

               70        80        90 
pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
       :::::::::::::::::::::::::::::::
CCDS30 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
               70        80        90 

>>CCDS76112.1 UQCRHL gene_id:440567|Hs108|chr1            (91 aa)
 initn: 587 init1: 587 opt: 587  Z-score: 623.4  bits: 120.0 E(32554): 2.1e-28
Smith-Waterman score: 587; 96.7% identity (98.9% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
       :::::::::::::::::::::::::::::::::::::::::::::::::::: ::.::::
CCDS76 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELYDEHVSSR
               10        20        30        40        50        60

               70        80        90 
pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
       :::::::::::::::::.:::::::::::::
CCDS76 SHTEEDCTEELFDFLHAKDHCVAHKLFNNLK
               70        80        90 




91 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:04:50 2016 done: Tue Nov  8 10:04:51 2016
 Total Scan time:  1.030 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]