FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6173, 81 aa
  1>>>pF1KE6173 81 - 81 aa - 81 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4584+/-0.000277; mu= 11.7005+/- 0.017
 mean_var=51.0931+/-10.614, 0's: 0 Z-trim(119.7): 4  B-trim: 0 in 0/50
 Lambda= 0.179429
 statistics sampled from 34026 (34030) to 34026 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.399), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(85289)
NP_003936 (OMIM: 603931) V-type proton ATPase subu (  81)  594 160.5 2.7e-40
NP_660265 (OMIM: 611019) V-type proton ATPase subu ( 130)  449 123.1 7.9e-29
NP_001276919 (OMIM: 611019) V-type proton ATPase s ( 236)  421 116.0 1.9e-26
NP_001094062 (OMIM: 611019) V-type proton ATPase s ( 213)  262 74.8 4.4e-14


>>NP_003936 (OMIM: 603931) V-type proton ATPase subunit   (81 aa)
 initn: 594 init1: 594 opt: 594  Z-score: 844.4  bits: 160.5 E(85289): 2.7e-40
Smith-Waterman score: 594; 100.0% identity (100.0% similar) in 81 aa overlap (1-81:1-81)

               10        20        30        40        50        60
pF1KE6 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL
               10        20        30        40        50        60

               70        80 
pF1KE6 NPLFGPQLKNETIWYLKYHWP
       :::::::::::::::::::::
NP_003 NPLFGPQLKNETIWYLKYHWP
               70        80 

>>NP_660265 (OMIM: 611019) V-type proton ATPase subunit   (130 aa)
 initn: 440 init1: 410 opt: 449  Z-score: 638.6  bits: 123.1 E(85289): 7.9e-29
Smith-Waterman score: 449; 71.2% identity (93.8% similar) in 80 aa overlap (1-80:50-129)

                                             10        20        30
pF1KE6                               MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK
                                     :. :....:.:....:::.::.  :::.::
NP_660 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK
      20        30        40        50        60        70         

               40        50        60        70        80 
pF1KE6 GPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHWP
       ::::::::::::. .::::::::::::::::::::::::::::::... : 
NP_660 GPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWYVRFLWE
      80        90       100       110       120       130

>>NP_001276919 (OMIM: 611019) V-type proton ATPase subun  (236 aa)
 initn: 421 init1: 421 opt: 421  Z-score: 595.7  bits: 116.0 E(85289): 1.9e-26
Smith-Waterman score: 421; 74.3% identity (94.6% similar) in 74 aa overlap (1-74:50-123)

                                             10        20        30
pF1KE6                               MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK
                                     :. :....:.:....:::.::.  :::.::
NP_001 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK
      20        30        40        50        60        70         

               40        50        60        70        80          
pF1KE6 GPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHWP         
       ::::::::::::. .:::::::::::::::::::::::::::::                
NP_001 GPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWCPALGMTVAPLSLTTP
      80        90       100       110       120       130         

NP_001 SSGPSPTQLCLVTSSLLLAPRDPDPQGLPGSWKSSQSSQPARALGSPGHSSGRGDVLLQY
     140       150       160       170       180       190         

>>NP_001094062 (OMIM: 611019) V-type proton ATPase subun  (213 aa)
 initn: 224 init1: 214 opt: 262  Z-score: 373.9  bits: 74.8 E(85289): 4.4e-14
Smith-Waterman score: 262; 50.7% identity (77.5% similar) in 71 aa overlap (1-66:50-120)

                                             10        20        30
pF1KE6                               MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK
                                     :. :....:.:....:::.::.  :::.::
NP_001 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK
      20        30        40        50        60        70         

               40        50             60        70        80     
pF1KE6 GPNRGVIITMLVTCSVCCYLF-----WLIAILAQLNPLFGPQLKNETIWYLKYHWP    
       ::::::::::::. .:::::.       .: :.  .:  ::                   
NP_001 GPNRGVIITMLVATAVCCYLLCPALGMTVAPLSLTTPSSGPSPTQLCLVTSSLLLAPRDP
      80        90       100       110       120       130         

NP_001 DPQGLPGSWKSSQSSQPARALGSPGHSSGRGDVLLQYPHCSGVCPLSQGDAAGELVWVGS
     140       150       160       170       180       190         




81 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:04:17 2016 done: Tue Nov  8 10:04:18 2016
 Total Scan time:  2.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]