FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6171, 83 aa
  1>>>pF1KE6171 83 - 83 aa - 83 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0177+/-0.000582; mu= 8.5762+/- 0.035
 mean_var=46.6951+/- 9.236, 0's: 0 Z-trim(109.4): 4  B-trim: 0 in 0/52
 Lambda= 0.187689
 statistics sampled from 10866 (10869) to 10866 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.334), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS34486.2 COX7A2 gene_id:1347|Hs108|chr6         ( 115)  512 145.5 4.9e-36
CCDS12490.1 COX7A1 gene_id:1346|Hs108|chr19        (  79)  287 84.5 7.5e-18
CCDS1808.1 COX7A2L gene_id:9167|Hs108|chr2         ( 114)  220 66.4 3.1e-12


>>CCDS34486.2 COX7A2 gene_id:1347|Hs108|chr6              (115 aa)
 initn: 512 init1: 512 opt: 512  Z-score: 760.4  bits: 145.5 E(32554): 4.9e-36
Smith-Waterman score: 512; 98.8% identity (98.8% similar) in 83 aa overlap (1-83:33-115)

                                             10        20        30
pF1KE6                               MLWNLLALRQIGQRTISTASRRHFKNKVPE
                                     :: :::::::::::::::::::::::::::
CCDS34 TQDSEVVPVPAWPFSLVVFSCGGCWSVTAKMLRNLLALRQIGQRTISTASRRHFKNKVPE
             10        20        30        40        50        60  

               40        50        60        70        80   
pF1KE6 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE
             70        80        90       100       110     

>>CCDS12490.1 COX7A1 gene_id:1346|Hs108|chr19             (79 aa)
 initn: 245 init1: 239 opt: 287  Z-score: 433.9  bits: 84.5 E(32554): 7.5e-18
Smith-Waterman score: 287; 56.4% identity (83.3% similar) in 78 aa overlap (5-80:1-78)

                 10        20        30        40        50        
pF1KE6 MLWNLLALR--QIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALLYRAT
           . :::  :   :..:...: .:.:.: :::::::::..::::::::..: .:::.:
CCDS12     MQALRVSQALIRSFSSTARNRFQNRVREKQKLFQEDNDIPLYLKGGIVDNILYRVT
                   10        20        30        40        50      

       60        70        80   
pF1KE6 MILTVGGTAYAIYELAVASFPKKQE
       : : .:::.:..: :. ::::.   
CCDS12 MTLCLGGTVYSLYSLGWASFPRN  
         60        70           

>>CCDS1808.1 COX7A2L gene_id:9167|Hs108|chr2              (114 aa)
 initn: 220 init1: 220 opt: 220  Z-score: 333.2  bits: 66.4 E(32554): 3.1e-12
Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:57-114)

                     10        20        30        40        50    
pF1KE6       MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL
                                     :::::: ::.::. : .:.::: :. : .:
CCDS18 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML
         30        40        50        60        70        80      

           60        70        80   
pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE
       ::.:: :::::: : .  : .:: ::.. 
CCDS18 YRTTMALTVGGTIYCLIALYMASQPKNK 
         90       100       110     




83 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:03:09 2016 done: Tue Nov  8 10:03:10 2016
 Total Scan time:  1.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]