FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6162, 172 aa
  1>>>pF1KE6162 172 - 172 aa - 172 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6065+/-0.000551; mu= 12.9727+/- 0.034
 mean_var=85.9416+/-17.042, 0's: 0 Z-trim(116.0): 6  B-trim: 230 in 1/49
 Lambda= 0.138348
 statistics sampled from 16593 (16598) to 16593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.51), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS13613.1 MRAP gene_id:56246|Hs108|chr21         ( 172) 1194 246.6 5.5e-66
CCDS13612.1 MRAP gene_id:56246|Hs108|chr21         ( 102)  448 97.6 2.5e-21


>>CCDS13613.1 MRAP gene_id:56246|Hs108|chr21              (172 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 1298.1  bits: 246.6 E(32554): 5.5e-66
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KE6 MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SWSASPQMRNSPKHHQTCPWSHGLNLHLCIQKCLPCHREPLATSQAQASSVEPGSRTGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SWSASPQMRNSPKHHQTCPWSHGLNLHLCIQKCLPCHREPLATSQAQASSVEPGSRTGPD
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KE6 QPLRQESSSTLPLGGFQTHPTLLWELTLNGGPLVRSKPSEPPPGDRTSQLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QPLRQESSSTLPLGGFQTHPTLLWELTLNGGPLVRSKPSEPPPGDRTSQLQS
              130       140       150       160       170  

>>CCDS13612.1 MRAP gene_id:56246|Hs108|chr21              (102 aa)
 initn: 445 init1: 445 opt: 448  Z-score: 496.5  bits: 97.6 E(32554): 2.5e-21
Smith-Waterman score: 448; 79.8% identity (89.9% similar) in 89 aa overlap (1-85:1-89)

               10        20        30        40        50        60
pF1KE6 MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM
               10        20        30        40        50        60

                70           80        90       100       110      
pF1KE6 SWSASPQMR-NSPK---HHQTCPWSHGLNLHLCIQKCLPCHREPLATSQAQASSVEPGSR
       ::::::::  :. .   : .. : .....                               
CCDS13 SWSASPQMSFNTDESLLHSEVLPQTRAISCDELQAPREEGAA                  
               70        80        90       100                    




172 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:58:45 2016 done: Tue Nov  8 09:58:46 2016
 Total Scan time:  2.050 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]