FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6156, 132 aa
  1>>>pF1KE6156 132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3246+/-0.000717; mu= 10.2026+/- 0.043
 mean_var=56.5289+/-11.199, 0's: 0 Z-trim(108.4): 18  B-trim: 60 in 2/51
 Lambda= 0.170584
 statistics sampled from 10163 (10181) to 10163 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.313), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS13950.1 LGALS2 gene_id:3957|Hs108|chr22        ( 132)  892 227.2 2.3e-60
CCDS13954.1 LGALS1 gene_id:3956|Hs108|chr22        ( 135)  391 103.9   3e-23
CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14        ( 250)  236 65.9 1.6e-11


>>CCDS13950.1 LGALS2 gene_id:3957|Hs108|chr22             (132 aa)
 initn: 892 init1: 892 opt: 892  Z-score: 1197.3  bits: 227.2 E(32554): 2.3e-60
Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE6 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSESTIVCNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSESTIVCNSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSYLSVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSYLSVR
               70        80        90       100       110       120

              130  
pF1KE6 GGFNMSSFKLKE
       ::::::::::::
CCDS13 GGFNMSSFKLKE
              130  

>>CCDS13954.1 LGALS1 gene_id:3956|Hs108|chr22             (135 aa)
 initn: 236 init1: 236 opt: 391  Z-score: 530.8  bits: 103.9 E(32554): 3e-23
Smith-Waterman score: 391; 44.2% identity (73.6% similar) in 129 aa overlap (1-125:1-129)

               10        20        30        40        50          
pF1KE6 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSE----STIV
       :.  : ..:...:::  :.. : .:  . .::.:::. ...: :::::::.     .:::
CCDS13 MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIV
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE6 CNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSY
       ::: ::. :: ::::  . :.::: ..  .::.. .. ::::::.:. :::::.   ..:
CCDS13 CNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINY
               70        80        90       100       110       120

        120       130  
pF1KE6 LSVRGGFNMSSFKLKE
       ... : :..       
CCDS13 MAADGDFKIKCVAFD 
              130      

>>CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14             (250 aa)
 initn: 192 init1: 146 opt: 236  Z-score: 320.3  bits: 65.9 E(32554): 1.6e-11
Smith-Waterman score: 236; 32.2% identity (68.6% similar) in 118 aa overlap (14-127:128-244)

                                10        20        30        40   
pF1KE6                  MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLN
                                     :   . : :..  ... ..... .:.: . 
CCDS41 TGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGND-VA
       100       110       120       130       140       150       

            50           60        70        80        90       100
pF1KE6 LHFNPRFSEST---IVCNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDG
       .::::::.:..   ::::.   .:::.:.:.. . :  :.  :. :  : :.::: . :.
CCDS41 FHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDA
        160       170       180       190       200       210      

              110        120       130   
pF1KE6 HELTFPNRLGH-SHLSYLSVRGGFNMSSFKLKE 
       : : . .:. . ...: :.. : ....:      
CCDS41 HLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
        220       230       240       250




132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:56:22 2016 done: Tue Nov  8 09:56:23 2016
 Total Scan time:  1.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]