Result of FASTA (omim) for
pFN21AE6154
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6154, 78 aa
1>>>pF1KE6154 78 - 78 aa - 78 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4507+/-0.000364; mu= 12.5265+/- 0.023
mean_var=50.9027+/-10.698, 0's: 0 Z-trim(111.6): 19 B-trim: 2295 in 2/50
Lambda= 0.179764
statistics sampled from 20180 (20199) to 20180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.237), width: 16
Scan time: 2.310
The best scores are: opt bits E(85289)
XP_016863629 (OMIM: 138590) PREDICTED: glycophorin ( 78) 476 130.7 2.4e-31
NP_002093 (OMIM: 138590) glycophorin-E precursor [ ( 78) 476 130.7 2.4e-31
XP_016863628 (OMIM: 138590) PREDICTED: glycophorin ( 78) 476 130.7 2.4e-31
NP_941391 (OMIM: 138590) glycophorin-E precursor [ ( 78) 476 130.7 2.4e-31
NP_002091 (OMIM: 111740,611162) glycophorin-B isof ( 91) 276 78.8 1.1e-15
XP_011530205 (OMIM: 111740,611162) PREDICTED: glyc ( 96) 276 78.8 1.2e-15
NP_001295116 (OMIM: 111300,611162) glycophorin-A i ( 137) 228 66.5 8.8e-12
XP_016863623 (OMIM: 111300,611162) PREDICTED: glyc ( 145) 228 66.5 9.2e-12
NP_002090 (OMIM: 111300,611162) glycophorin-A isof ( 150) 228 66.5 9.4e-12
XP_011530207 (OMIM: 111740,611162) PREDICTED: glyc ( 82) 207 60.9 2.5e-10
XP_011530206 (OMIM: 111740,611162) PREDICTED: glyc ( 87) 207 60.9 2.7e-10
XP_016863626 (OMIM: 111740,611162) PREDICTED: glyc ( 65) 158 48.1 1.4e-06
NP_001291311 (OMIM: 111740,611162) glycophorin-B i ( 65) 158 48.1 1.4e-06
XP_016863625 (OMIM: 111300,611162) PREDICTED: glyc ( 112) 128 40.5 0.00048
NP_001295119 (OMIM: 111300,611162) glycophorin-A i ( 117) 128 40.5 0.00049
>>XP_016863629 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa)
initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
10 20 30 40 50 60
70
pF1KE6 EVMLVVVGMIILISYCIR
::::::::::::::::::
XP_016 EVMLVVVGMIILISYCIR
70
>>NP_002093 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa)
initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
10 20 30 40 50 60
70
pF1KE6 EVMLVVVGMIILISYCIR
::::::::::::::::::
NP_002 EVMLVVVGMIILISYCIR
70
>>XP_016863628 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa)
initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
10 20 30 40 50 60
70
pF1KE6 EVMLVVVGMIILISYCIR
::::::::::::::::::
XP_016 EVMLVVVGMIILISYCIR
70
>>NP_941391 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa)
initn: 476 init1: 476 opt: 476 Z-score: 683.7 bits: 130.7 E(85289): 2.4e-31
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_941 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
10 20 30 40 50 60
70
pF1KE6 EVMLVVVGMIILISYCIR
::::::::::::::::::
NP_941 EVMLVVVGMIILISYCIR
70
>>NP_002091 (OMIM: 111740,611162) glycophorin-B isoform (91 aa)
initn: 298 init1: 237 opt: 276 Z-score: 402.4 bits: 78.8 E(85289): 1.1e-15
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-78:1-86)
10 20 30 40 50
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR-
:::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ...
NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50 60
60 70
pF1KE6 -----VIFEVMLVVVGMIILISYCIR
.:. :: ..: :.:::: ::
NP_002 VVIILIILCVMAGIIGTILLISYTIRRLIKA
70 80 90
>>XP_011530205 (OMIM: 111740,611162) PREDICTED: glycopho (96 aa)
initn: 298 init1: 237 opt: 276 Z-score: 402.0 bits: 78.8 E(85289): 1.2e-15
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-78:1-86)
10 20 30 40 50
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR-
:::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ...
XP_011 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50 60
60 70
pF1KE6 -----VIFEVMLVVVGMIILISYCIR
.:. :: ..: :.:::: ::
XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKVTALNV
70 80 90
>>NP_001295116 (OMIM: 111300,611162) glycophorin-A isofo (137 aa)
initn: 289 init1: 228 opt: 228 Z-score: 332.6 bits: 66.5 E(85289): 8.8e-12
Smith-Waterman score: 239; 54.9% identity (61.8% similar) in 102 aa overlap (1-78:1-102)
10 20 30 40 50
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWA------
:::::::::::: :::::: ::: ::::::::::::::::::::: . .:
NP_001 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30 40 50 60
60 70
pF1KE6 ------------------MARVIFEVMLVVVGMIILISYCIR
.. .:: :: :.: :.:::: ::
NP_001 EVSEISVRTVYPPEEETEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDT
70 80 90 100 110 120
NP_001 DVPLSSVEIENPETSDQ
130
>>XP_016863623 (OMIM: 111300,611162) PREDICTED: glycopho (145 aa)
initn: 289 init1: 228 opt: 228 Z-score: 332.2 bits: 66.5 E(85289): 9.2e-12
Smith-Waterman score: 228; 93.3% identity (93.3% similar) in 45 aa overlap (1-45:1-45)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
:::::::::::: :::::: ::: :::::::::::::::::::::
XP_016 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30 40 50 60
70
pF1KE6 EVMLVVVGMIILISYCIR
XP_016 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKR
70 80 90 100 110 120
>>NP_002090 (OMIM: 111300,611162) glycophorin-A isoform (150 aa)
initn: 289 init1: 228 opt: 228 Z-score: 332.0 bits: 66.5 E(85289): 9.4e-12
Smith-Waterman score: 228; 93.3% identity (93.3% similar) in 45 aa overlap (1-45:1-45)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
:::::::::::: :::::: ::: :::::::::::::::::::::
NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30 40 50 60
70
pF1KE6 EVMLVVVGMIILISYCIR
NP_002 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
70 80 90 100 110 120
>>XP_011530207 (OMIM: 111740,611162) PREDICTED: glycopho (82 aa)
initn: 229 init1: 168 opt: 207 Z-score: 306.3 bits: 60.9 E(85289): 2.5e-10
Smith-Waterman score: 207; 60.3% identity (74.0% similar) in 73 aa overlap (14-78:5-77)
10 20 30 40 50
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR-
:::::: ::: :::::::::::::::::::::: : :.. ...
XP_011 MSKEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50
60 70
pF1KE6 -----VIFEVMLVVVGMIILISYCIR
.:. :: ..: :.:::: ::
XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKA
60 70 80
78 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:55:19 2016 done: Tue Nov 8 09:55:20 2016
Total Scan time: 2.310 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]