FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6153, 141 aa
  1>>>pF1KE6153 141 - 141 aa - 141 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4654+/-0.000322; mu= 10.2107+/- 0.020
 mean_var=57.9653+/-11.604, 0's: 0 Z-trim(115.6): 11  B-trim: 745 in 1/50
 Lambda= 0.168457
 statistics sampled from 26215 (26217) to 26215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.307), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(85289)
NP_057016 (OMIM: 601952,613386) proteasome maturat ( 141)  917 230.6 6.4e-61


>>NP_057016 (OMIM: 601952,613386) proteasome maturation   (141 aa)
 initn: 917 init1: 917 opt: 917  Z-score: 1214.7  bits: 230.6 E(85289): 6.4e-61
Smith-Waterman score: 917; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE6 MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND
               70        80        90       100       110       120

              130       140 
pF1KE6 PSQSEVMGEPHLMVEYKLGLL
       :::::::::::::::::::::
NP_057 PSQSEVMGEPHLMVEYKLGLL
              130       140 




141 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:54:54 2016 done: Tue Nov  8 09:54:54 2016
 Total Scan time:  3.540 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]