FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6153, 141 aa
  1>>>pF1KE6153 141 - 141 aa - 141 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3310+/-0.000722; mu= 10.8859+/- 0.044
 mean_var=58.8713+/-11.480, 0's: 0 Z-trim(108.5): 13  B-trim: 7 in 1/49
 Lambda= 0.167156
 statistics sampled from 10241 (10244) to 10241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.315), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS9331.1 POMP gene_id:51371|Hs108|chr13          ( 141)  917 228.9 7.9e-61


>>CCDS9331.1 POMP gene_id:51371|Hs108|chr13               (141 aa)
 initn: 917 init1: 917 opt: 917  Z-score: 1205.6  bits: 228.9 E(32554): 7.9e-61
Smith-Waterman score: 917; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE6 MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND
               70        80        90       100       110       120

              130       140 
pF1KE6 PSQSEVMGEPHLMVEYKLGLL
       :::::::::::::::::::::
CCDS93 PSQSEVMGEPHLMVEYKLGLL
              130       140 




141 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:54:53 2016 done: Tue Nov  8 09:54:54 2016
 Total Scan time:  1.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]