FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6151, 97 aa
  1>>>pF1KE6151 97 - 97 aa - 97 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6669+/-0.000252; mu= 13.2760+/- 0.016
 mean_var=57.9789+/-11.660, 0's: 0 Z-trim(122.2): 10  B-trim: 385 in 1/51
 Lambda= 0.168438
 statistics sampled from 40004 (40015) to 40004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.469), width:  16
 Scan time:  4.220

The best scores are:                                      opt bits E(85289)
NP_005196 (OMIM: 602009) cytochrome c oxidase subu (  97)  699 176.6 5.6e-45
NP_004364 (OMIM: 602072,616039) cytochrome c oxida ( 109)  388 101.0 3.5e-22


>>NP_005196 (OMIM: 602009) cytochrome c oxidase subunit   (97 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 928.4  bits: 176.6 E(85289): 5.6e-45
Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE6 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR
               10        20        30        40        50        60

               70        80        90       
pF1KE6 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
       :::::::::::::::::::::::::::::::::::::
NP_005 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
               70        80        90       

>>NP_004364 (OMIM: 602072,616039) cytochrome c oxidase s  (109 aa)
 initn: 292 init1: 282 opt: 388  Z-score: 519.3  bits: 101.0 E(85289): 3.5e-22
Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (6-95:17-107)

                           10        20        30        40        
pF1KE6            MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY
                       :: : : ..:.:.: .:.  :: :. ::: .:::.::.  .: :
NP_004 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGS--ARMWKTLTFFVALPGVAVSMLNVY
               10        20        30          40        50        

         50        60        70        80        90       
pF1KE6 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
       :  : :.. ::::  : ::::::::.:::::::::::: ::::::::::  
NP_004 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE
       60        70        80        90       100         




97 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:53:58 2016 done: Tue Nov  8 09:53:59 2016
 Total Scan time:  4.220 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]