FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6148, 102 aa
  1>>>pF1KE6148 102 - 102 aa - 102 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9090+/-0.000235; mu= 12.2154+/- 0.015
 mean_var=58.6707+/-11.555, 0's: 0 Z-trim(122.6): 6  B-trim: 0 in 0/54
 Lambda= 0.167442
 statistics sampled from 41096 (41102) to 41096 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.482), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(85289)
NP_001305151 (OMIM: 605821) alpha-hemoglobin-stabi ( 102)  673 169.4 9.2e-43
NP_057717 (OMIM: 605821) alpha-hemoglobin-stabiliz ( 102)  673 169.4 9.2e-43
NP_001305150 (OMIM: 605821) alpha-hemoglobin-stabi ( 102)  673 169.4 9.2e-43


>>NP_001305151 (OMIM: 605821) alpha-hemoglobin-stabilizi  (102 aa)
 initn: 673 init1: 673 opt: 673  Z-score: 888.7  bits: 169.4 E(85289): 9.2e-43
Smith-Waterman score: 673; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KE6 MALLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEP
               10        20        30        40        50        60

               70        80        90       100  
pF1KE6 QERDKALQELRQELNTLANPFLAKYRDFLKSHELPSHPPPSS
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 QERDKALQELRQELNTLANPFLAKYRDFLKSHELPSHPPPSS
               70        80        90       100  

>>NP_057717 (OMIM: 605821) alpha-hemoglobin-stabilizing   (102 aa)
 initn: 673 init1: 673 opt: 673  Z-score: 888.7  bits: 169.4 E(85289): 9.2e-43
Smith-Waterman score: 673; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KE6 MALLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MALLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEP
               10        20        30        40        50        60

               70        80        90       100  
pF1KE6 QERDKALQELRQELNTLANPFLAKYRDFLKSHELPSHPPPSS
       ::::::::::::::::::::::::::::::::::::::::::
NP_057 QERDKALQELRQELNTLANPFLAKYRDFLKSHELPSHPPPSS
               70        80        90       100  

>>NP_001305150 (OMIM: 605821) alpha-hemoglobin-stabilizi  (102 aa)
 initn: 673 init1: 673 opt: 673  Z-score: 888.7  bits: 169.4 E(85289): 9.2e-43
Smith-Waterman score: 673; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KE6 MALLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALLKANKDLISAGLKEFSVLLNQQVFNDPLVSEEDMVTVVEDWMNFYINYYRQQVTGEP
               10        20        30        40        50        60

               70        80        90       100  
pF1KE6 QERDKALQELRQELNTLANPFLAKYRDFLKSHELPSHPPPSS
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 QERDKALQELRQELNTLANPFLAKYRDFLKSHELPSHPPPSS
               70        80        90       100  




102 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:52:27 2016 done: Tue Nov  8 09:52:27 2016
 Total Scan time:  4.260 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]