FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6147, 145 aa
  1>>>pF1KE6147 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7125+/-0.000354; mu= 8.3121+/- 0.022
 mean_var=58.4329+/-11.967, 0's: 0 Z-trim(112.9): 5  B-trim: 238 in 1/51
 Lambda= 0.167782
 statistics sampled from 21987 (21988) to 21987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.258), width:  16
 Scan time:  4.180

The best scores are:                                      opt bits E(85289)
NP_000308 (OMIM: 261640,612719) 6-pyruvoyl tetrahy ( 145)  966 242.1 2.4e-64


>>NP_000308 (OMIM: 261640,612719) 6-pyruvoyl tetrahydrob  (145 aa)
 initn: 966 init1: 966 opt: 966  Z-score: 1276.2  bits: 242.1 E(85289): 2.4e-64
Smith-Waterman score: 966; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE6 MSTEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSTEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQK
               70        80        90       100       110       120

              130       140     
pF1KE6 VLPVGVLYKVKVYETDNNIVVYKGE
       :::::::::::::::::::::::::
NP_000 VLPVGVLYKVKVYETDNNIVVYKGE
              130       140     




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:51:54 2016 done: Tue Nov  8 09:51:55 2016
 Total Scan time:  4.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]