FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6136, 103 aa
  1>>>pF1KE6136 103 - 103 aa - 103 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1755+/-0.000319; mu= 10.0843+/- 0.020
 mean_var=56.3482+/-11.042, 0's: 0 Z-trim(115.4): 5  B-trim: 0 in 0/56
 Lambda= 0.170858
 statistics sampled from 25876 (25879) to 25876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.303), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(85289)
NP_000891 (OMIM: 154870,245150) matrix Gla protein ( 103)  682 175.6 1.2e-44
NP_001177768 (OMIM: 154870,245150) matrix Gla prot ( 128)  568 147.6 4.2e-36


>>NP_000891 (OMIM: 154870,245150) matrix Gla protein iso  (103 aa)
 initn: 723 init1: 682 opt: 682  Z-score: 922.5  bits: 175.6 E(85289): 1.2e-44
Smith-Waterman score: 682; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KE6 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE
               10        20        30        40        50        60

               70        80        90       100   
pF1KE6 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGAK
       :::::::::::::::::::::::::::::::::::::::::.:
NP_000 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGTK
               70        80        90       100   

>>NP_001177768 (OMIM: 154870,245150) matrix Gla protein   (128 aa)
 initn: 693 init1: 568 opt: 568  Z-score: 769.1  bits: 147.6 E(85289): 4.2e-36
Smith-Waterman score: 622; 79.7% identity (80.5% similar) in 128 aa overlap (1-103:1-128)

               10        20                                 30     
pF1KE6 MKSLILLAILAALAVVTLCY-------------------------ESHESMESYELNPFI
       ::::::::::::::::::::                         :::::::::::::::
NP_001 MKSLILLAILAALAVVTLCYGEWQKEENFGFDIVSVLSLNWHRAQESHESMESYELNPFI
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KE6 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY
               70        80        90       100       110       120

         100   
pF1KE6 FRKRRGAK
       ::::::.:
NP_001 FRKRRGTK
               




103 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:46:39 2016 done: Tue Nov  8 09:46:40 2016
 Total Scan time:  4.050 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]