FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6136, 103 aa
  1>>>pF1KE6136 103 - 103 aa - 103 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2523+/-0.000669; mu= 9.4819+/- 0.040
 mean_var=55.2464+/-10.916, 0's: 0 Z-trim(108.9): 13  B-trim: 2 in 1/51
 Lambda= 0.172553
 statistics sampled from 10481 (10488) to 10481 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.322), width:  16
 Scan time:  1.070

The best scores are:                                      opt bits E(32554)
CCDS8669.1 MGP gene_id:4256|Hs108|chr12            ( 103)  682 177.2 1.6e-45
CCDS53752.1 MGP gene_id:4256|Hs108|chr12           ( 128)  568 148.8 6.7e-37


>>CCDS8669.1 MGP gene_id:4256|Hs108|chr12                 (103 aa)
 initn: 723 init1: 682 opt: 682  Z-score: 930.9  bits: 177.2 E(32554): 1.6e-45
Smith-Waterman score: 682; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KE6 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE
               10        20        30        40        50        60

               70        80        90       100   
pF1KE6 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGAK
       :::::::::::::::::::::::::::::::::::::::::.:
CCDS86 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGTK
               70        80        90       100   

>>CCDS53752.1 MGP gene_id:4256|Hs108|chr12                (128 aa)
 initn: 693 init1: 568 opt: 568  Z-score: 776.0  bits: 148.8 E(32554): 6.7e-37
Smith-Waterman score: 622; 79.7% identity (80.5% similar) in 128 aa overlap (1-103:1-128)

               10        20                                 30     
pF1KE6 MKSLILLAILAALAVVTLCY-------------------------ESHESMESYELNPFI
       ::::::::::::::::::::                         :::::::::::::::
CCDS53 MKSLILLAILAALAVVTLCYGEWQKEENFGFDIVSVLSLNWHRAQESHESMESYELNPFI
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KE6 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY
               70        80        90       100       110       120

         100   
pF1KE6 FRKRRGAK
       ::::::.:
CCDS53 FRKRRGTK
               




103 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:46:39 2016 done: Tue Nov  8 09:46:39 2016
 Total Scan time:  1.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]