FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6134, 143 aa
  1>>>pF1KE6134 143 - 143 aa - 143 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8043+/-0.00085; mu= 13.8013+/- 0.051
 mean_var=53.7681+/-11.142, 0's: 0 Z-trim(105.8): 10  B-trim: 246 in 1/46
 Lambda= 0.174909
 statistics sampled from 8616 (8620) to 8616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.265), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS6788.1 SLC31A2 gene_id:1318|Hs108|chr9         ( 143)  931 242.5 6.7e-65
CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9         ( 190)  223 63.9 5.1e-11


>>CCDS6788.1 SLC31A2 gene_id:1318|Hs108|chr9              (143 aa)
 initn: 931 init1: 931 opt: 931  Z-score: 1278.7  bits: 242.5 E(32554): 6.7e-65
Smith-Waterman score: 931; 100.0% identity (100.0% similar) in 143 aa overlap (1-143:1-143)

               10        20        30        40        50        60
pF1KE6 MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 SISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTW
               70        80        90       100       110       120

              130       140   
pF1KE6 IFLGVVLGSAVGYYLAYPLLSTA
       :::::::::::::::::::::::
CCDS67 IFLGVVLGSAVGYYLAYPLLSTA
              130       140   

>>CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9              (190 aa)
 initn: 210 init1: 118 opt: 223  Z-score: 311.3  bits: 63.9 E(32554): 5.1e-11
Smith-Waterman score: 228; 33.6% identity (65.0% similar) in 143 aa overlap (1-135:43-174)

                                             10         20         
pF1KE6                               MAMHFIFSDTAV-LLFDFWSVHSPAGMALS
                                     : : : :.   : :::.   ... . :: .
CCDS67 DSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGA
             20        30        40        50        60        70  

      30        40        50             60        70          80  
pF1KE6 VLVLLLLAVLYEGIKVGKAKLL--NQVLV---NLPTSISQQTIAETDGDSAGSD--SFPV
        ....:::..:::.:... .::  .:: .   ..:.   . ::      ..:..  ::: 
CCDS67 FVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFP-
             80        90       100       110       120       130  

             90       100       110       120       130       140  
pF1KE6 GRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLST
                 :. :...:.:::::.::.::  :.:: .. ..:. :...::.:       
CCDS67 ----------HLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAV
                       140       150       160       170       180 

                
pF1KE6 A        
                
CCDS67 VVDITEHCH
             190




143 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:45:33 2016 done: Tue Nov  8 09:45:33 2016
 Total Scan time:  1.450 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]