FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6133, 51 aa
  1>>>pF1KE6133 51 - 51 aa - 51 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.0579+/-0.000485; mu= 13.7913+/- 0.030
 mean_var=79.3559+/-15.575, 0's: 0 Z-trim(117.9): 31  B-trim: 254 in 1/51
 Lambda= 0.143974
 statistics sampled from 18713 (18749) to 18713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.866), E-opt: 0.2 (0.576), width:  16
 Scan time:  0.990

The best scores are:                                      opt bits E(32554)
CCDS10547.1 PRM1 gene_id:5619|Hs108|chr16          (  51)  390 87.8 3.1e-19


>>CCDS10547.1 PRM1 gene_id:5619|Hs108|chr16               (51 aa)
 initn: 390 init1: 390 opt: 390  Z-score: 458.7  bits: 87.8 E(32554): 3.1e-19
Smith-Waterman score: 390; 100.0% identity (100.0% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50 
pF1KE6 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH
               10        20        30        40        50 




51 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:45:01 2016 done: Tue Nov  8 09:45:01 2016
 Total Scan time:  0.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]