Result of FASTA (omim) for
pFN21AE6130
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6130, 141 aa
1>>>pF1KE6130 141 - 141 aa - 141 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7725+/-0.000341; mu= 8.7878+/- 0.021
mean_var=65.4403+/-13.749, 0's: 0 Z-trim(114.8): 29 B-trim: 488 in 1/52
Lambda= 0.158545
statistics sampled from 24843 (24872) to 24843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.292), width: 16
Scan time: 4.710
The best scores are: opt bits E(85289)
NP_001317198 (OMIM: 603193) ATP synthase F(0) comp ( 141) 868 206.9 8.9e-54
NP_001002031 (OMIM: 603193) ATP synthase F(0) comp ( 157) 868 206.9 9.9e-54
XP_016874950 (OMIM: 603193) PREDICTED: ATP synthas ( 157) 868 206.9 9.9e-54
XP_016874949 (OMIM: 603193) PREDICTED: ATP synthas ( 198) 868 206.9 1.2e-53
NP_005167 (OMIM: 603193) ATP synthase F(0) complex ( 198) 868 206.9 1.2e-53
NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142) 638 154.3 6.2e-38
NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142) 638 154.3 6.2e-38
NP_005166 (OMIM: 603192) ATP synthase F(0) complex ( 136) 567 138.0 4.6e-33
NP_001002027 (OMIM: 603192) ATP synthase F(0) comp ( 136) 567 138.0 4.6e-33
NP_001177258 (OMIM: 602736) ATP synthase F(0) comp ( 105) 402 100.3 8.3e-22
>>NP_001317198 (OMIM: 603193) ATP synthase F(0) complex (141 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1086.4 bits: 206.9 E(85289): 8.9e-54
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF
70 80 90 100 110 120
130 140
pF1KE6 ALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::
NP_001 ALSEAMGLFCLMVAFLILFAM
130 140
>>NP_001002031 (OMIM: 603193) ATP synthase F(0) complex (157 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1085.7 bits: 206.9 E(85289): 9.9e-54
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:17-157)
10 20 30 40
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100 110 120
110 120 130 140
pF1KE6 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::
NP_001 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
130 140 150
>>XP_016874950 (OMIM: 603193) PREDICTED: ATP synthase F( (157 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1085.7 bits: 206.9 E(85289): 9.9e-54
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:17-157)
10 20 30 40
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100 110 120
110 120 130 140
pF1KE6 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::
XP_016 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
130 140 150
>>XP_016874949 (OMIM: 603193) PREDICTED: ATP synthase F( (198 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1084.0 bits: 206.9 E(85289): 1.2e-53
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:58-198)
10 20 30
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVL
::::::::::::::::::::::::::::::
XP_016 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE6 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG
90 100 110 120 130 140
100 110 120 130 140
pF1KE6 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
150 160 170 180 190
>>NP_005167 (OMIM: 603193) ATP synthase F(0) complex sub (198 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1084.0 bits: 206.9 E(85289): 1.2e-53
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:58-198)
10 20 30
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVL
::::::::::::::::::::::::::::::
NP_005 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE6 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG
90 100 110 120 130 140
100 110 120 130 140
pF1KE6 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
150 160 170 180 190
>>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub (142 aa)
initn: 645 init1: 525 opt: 638 Z-score: 802.1 bits: 154.3 E(85289): 6.2e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-141:1-142)
10 20 30 40 50
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF
::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: :
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
120 130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
130 140
>>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex (142 aa)
initn: 645 init1: 525 opt: 638 Z-score: 802.1 bits: 154.3 E(85289): 6.2e-38
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-141:1-142)
10 20 30 40 50
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF
::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: :
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
120 130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
130 140
>>NP_005166 (OMIM: 603192) ATP synthase F(0) complex sub (136 aa)
initn: 548 init1: 523 opt: 567 Z-score: 714.6 bits: 138.0 E(85289): 4.6e-33
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (7-141:8-136)
10 20 30 40 50
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
:.: :.:.. .. : ::.:: :. : .. : . . :: :. : :
NP_005 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
120 130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_005 FALSEAMGLFCLMVAFLILFAM
120 130
>>NP_001002027 (OMIM: 603192) ATP synthase F(0) complex (136 aa)
initn: 548 init1: 523 opt: 567 Z-score: 714.6 bits: 138.0 E(85289): 4.6e-33
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (7-141:8-136)
10 20 30 40 50
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
:.: :.:.. .. : ::.:: :. : .. : . . :: :. : :
NP_001 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
120 130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
120 130
>>NP_001177258 (OMIM: 602736) ATP synthase F(0) complex (105 aa)
initn: 409 init1: 289 opt: 402 Z-score: 512.5 bits: 100.3 E(85289): 8.3e-22
Smith-Waterman score: 402; 65.7% identity (81.9% similar) in 105 aa overlap (1-104:1-105)
10 20 30 40 50
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF
::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: :
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100
120 130 140
pF1KE6 FALSEAMGLFCLMVAFLILFAM
141 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:43:07 2016 done: Tue Nov 8 09:43:08 2016
Total Scan time: 4.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]