FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6130, 141 aa
  1>>>pF1KE6130 141 - 141 aa - 141 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8932+/-0.000749; mu= 8.2138+/- 0.045
 mean_var=60.8546+/-12.582, 0's: 0 Z-trim(108.1): 16  B-trim: 0 in 0/49
 Lambda= 0.164410
 statistics sampled from 9966 (9977) to 9966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12         ( 141)  868 213.8 2.8e-56
CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12         ( 157)  868 213.8 3.1e-56
CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12          ( 198)  868 213.9 3.8e-56
CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2           ( 142)  638 159.3 7.3e-40
CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17         ( 136)  567 142.4 8.3e-35


>>CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12              (141 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1124.0  bits: 213.8 E(32554): 2.8e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF
               70        80        90       100       110       120

              130       140 
pF1KE6 ALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::
CCDS81 ALSEAMGLFCLMVAFLILFAM
              130       140 

>>CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12              (157 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1123.2  bits: 213.8 E(32554): 3.1e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:17-157)

                               10        20        30        40    
pF1KE6                 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KE6 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
               70        80        90       100       110       120

          110       120       130       140 
pF1KE6 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::
CCDS31 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
              130       140       150       

>>CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12               (198 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1121.4  bits: 213.9 E(32554): 3.8e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:58-198)

                                             10        20        30
pF1KE6                               MFACSKFVSTPSLVKSTSQLLSRPLSAVVL
                                     ::::::::::::::::::::::::::::::
CCDS88 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL
        30        40        50        60        70        80       

               40        50        60        70        80        90
pF1KE6 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG
        90       100       110       120       130       140       

              100       110       120       130       140 
pF1KE6 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       150       160       170       180       190        

>>CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2                (142 aa)
 initn: 645 init1: 525 opt: 638  Z-score: 829.1  bits: 159.3 E(32554): 7.3e-40
Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-141:1-142)

               10        20        30         40        50         
pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF
       ::::.:.. ::::... :..  ::.:: ::.:::   : :. . .  .   .: . .: :
CCDS22 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
               70        80        90       100       110       120

     120       130       140 
pF1KE6 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
CCDS22 FALSEAMGLFCLMVAFLILFAM
              130       140  

>>CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17              (136 aa)
 initn: 548 init1: 523 opt: 567  Z-score: 738.4  bits: 142.4 E(32554): 8.3e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (7-141:8-136)

                10        20        30        40        50         
pF1KE6  MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
              :.: :.:..  .. : ::.::  :. :   .. : .    . ::   :. : :
CCDS11 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
               10         20        30           40          50    

      60        70        80        90       100       110         
pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
           60        70        80        90       100       110    

     120       130       140 
pF1KE6 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
CCDS11 FALSEAMGLFCLMVAFLILFAM
          120       130      




141 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:43:06 2016 done: Tue Nov  8 09:43:07 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]