Result of FASTA (omim) for
pFN21AE6129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6129, 150 aa
1>>>pF1KE6129 150 - 150 aa - 150 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2598+/-0.000319; mu= 12.6812+/- 0.020
mean_var=65.0095+/-12.795, 0's: 0 Z-trim(116.2): 20 B-trim: 101 in 1/53
Lambda= 0.159069
statistics sampled from 27254 (27274) to 27254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.32), width: 16
Scan time: 4.350
The best scores are: opt bits E(85289)
NP_002090 (OMIM: 111300,611162) glycophorin-A isof ( 150) 925 220.3 9.6e-58
XP_016863624 (OMIM: 111300,611162) PREDICTED: glyc ( 124) 788 188.8 2.4e-48
XP_016863623 (OMIM: 111300,611162) PREDICTED: glyc ( 145) 725 174.3 6.1e-44
NP_001295119 (OMIM: 111300,611162) glycophorin-A i ( 117) 679 163.7 7.7e-41
XP_016863625 (OMIM: 111300,611162) PREDICTED: glyc ( 112) 479 117.8 4.8e-27
NP_001295116 (OMIM: 111300,611162) glycophorin-A i ( 137) 459 113.3 1.4e-25
NP_002091 (OMIM: 111740,611162) glycophorin-B isof ( 91) 247 64.5 4.3e-11
XP_011530205 (OMIM: 111740,611162) PREDICTED: glyc ( 96) 247 64.6 4.5e-11
NP_941391 (OMIM: 138590) glycophorin-E precursor [ ( 78) 231 60.8 4.9e-10
XP_016863628 (OMIM: 138590) PREDICTED: glycophorin ( 78) 231 60.8 4.9e-10
NP_002093 (OMIM: 138590) glycophorin-E precursor [ ( 78) 231 60.8 4.9e-10
XP_016863629 (OMIM: 138590) PREDICTED: glycophorin ( 78) 231 60.8 4.9e-10
XP_016863626 (OMIM: 111740,611162) PREDICTED: glyc ( 65) 178 48.6 1.9e-06
NP_001291311 (OMIM: 111740,611162) glycophorin-B i ( 65) 176 48.2 2.6e-06
XP_011530207 (OMIM: 111740,611162) PREDICTED: glyc ( 82) 176 48.2 3.2e-06
XP_011530206 (OMIM: 111740,611162) PREDICTED: glyc ( 87) 176 48.2 3.4e-06
>>NP_002090 (OMIM: 111300,611162) glycophorin-A isoform (150 aa)
initn: 925 init1: 925 opt: 925 Z-score: 1157.7 bits: 220.3 E(85289): 9.6e-58
Smith-Waterman score: 925; 99.3% identity (99.3% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
70 80 90 100 110 120
130 140 150
pF1KE6 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
::::::::::::::::::::::::::::::
NP_002 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
130 140 150
>>XP_016863624 (OMIM: 111300,611162) PREDICTED: glycopho (124 aa)
initn: 788 init1: 788 opt: 788 Z-score: 989.0 bits: 188.8 E(85289): 2.4e-48
Smith-Waterman score: 788; 100.0% identity (100.0% similar) in 124 aa overlap (27-150:1-124)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
::::::::::::::::::::::::::::::::::
XP_016 MHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30
70 80 90 100 110 120
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
40 50 60 70 80 90
130 140 150
pF1KE6 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
::::::::::::::::::::::::::::::
XP_016 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
100 110 120
>>XP_016863623 (OMIM: 111300,611162) PREDICTED: glycopho (145 aa)
initn: 738 init1: 722 opt: 725 Z-score: 909.9 bits: 174.3 E(85289): 6.1e-44
Smith-Waterman score: 725; 88.8% identity (95.5% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKR
70 80 90 100 110 120
130 140 150
pF1KE6 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
. . . . .:...
XP_016 QVINENLFTKPNVERTQRRHKTSVK
130 140
>>NP_001295119 (OMIM: 111300,611162) glycophorin-A isofo (117 aa)
initn: 679 init1: 679 opt: 679 Z-score: 854.2 bits: 163.7 E(85289): 7.7e-41
Smith-Waterman score: 679; 99.1% identity (100.0% similar) in 106 aa overlap (45-150:12-117)
20 30 40 50 60 70
pF1KE6 VSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPE
.:::::::::::::::::::::::::::::
NP_001 MYGKIIFVLLLSDTHKRDTYAATPRAHEVSEISVRTVYPPE
10 20 30 40
80 90 100 110 120 130
pF1KE6 EETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTD
50 60 70 80 90 100
140 150
pF1KE6 VPLSSVEIENPETSDQ
::::::::::::::::
NP_001 VPLSSVEIENPETSDQ
110
>>XP_016863625 (OMIM: 111300,611162) PREDICTED: glycopho (112 aa)
initn: 549 init1: 475 opt: 479 Z-score: 606.5 bits: 117.8 E(85289): 4.8e-27
Smith-Waterman score: 479; 83.3% identity (94.4% similar) in 90 aa overlap (45-134:12-101)
20 30 40 50 60 70
pF1KE6 VSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPE
.:::::::::::::::::::::::::::::
XP_016 MYGKIIFVLLLSDTHKRDTYAATPRAHEVSEISVRTVYPPE
10 20 30 40
80 90 100 110 120 130
pF1KE6 EETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTD
:::::::::::::::::::::::::::::::::::::::::::::.. . . . .:...
XP_016 EETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKRQVINENLFTKPNVE
50 60 70 80 90 100
140 150
pF1KE6 VPLSSVEIENPETSDQ
XP_016 RTQRRHKTSVK
110
>>NP_001295116 (OMIM: 111300,611162) glycophorin-A isofo (137 aa)
initn: 515 init1: 456 opt: 459 Z-score: 580.3 bits: 113.3 E(85289): 1.4e-25
Smith-Waterman score: 797; 90.7% identity (90.7% similar) in 150 aa overlap (1-150:1-137)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 EVSEISVRTVYPPEEET-------------EITLIIFGVMAGVIGTILLISYGIRRLIKK
70 80 90 100
130 140 150
pF1KE6 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
::::::::::::::::::::::::::::::
NP_001 SPSDVKPLPSPDTDVPLSSVEIENPETSDQ
110 120 130
>>NP_002091 (OMIM: 111740,611162) glycophorin-B isoform (91 aa)
initn: 365 init1: 247 opt: 247 Z-score: 320.1 bits: 64.5 E(85289): 4.3e-11
Smith-Waterman score: 334; 60.7% identity (64.8% similar) in 122 aa overlap (1-119:1-90)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
:::::::::::: ::::::::::::::::::::::::::::::::
NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN---------------
10 20 30 40
70 80 90 100 110
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPE---ITLIIFGVMAGVIGTILLISYGIRRL
:: ::.:.:. : : :::. ::::.::::::::: ::::
NP_002 -----------------GETGQLVHRFTVPAPVVIILIILCVMAGIIGTILLISYTIRRL
50 60 70 80
120 130 140 150
pF1KE6 IKKSPSDVKPLPSPDTDVPLSSVEIENPETSDQ
::
NP_002 IKA
90
>>XP_011530205 (OMIM: 111740,611162) PREDICTED: glycopho (96 aa)
initn: 367 init1: 247 opt: 247 Z-score: 319.7 bits: 64.6 E(85289): 4.5e-11
Smith-Waterman score: 338; 58.6% identity (64.8% similar) in 128 aa overlap (1-125:1-96)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
:::::::::::: ::::::::::::::::::::::::::::::::
XP_011 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN---------------
10 20 30 40
70 80 90 100 110
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPE---ITLIIFGVMAGVIGTILLISYGIRRL
:: ::.:.:. : : :::. ::::.:::::::::.::::
XP_011 -----------------GETGQLVHRFTVPAPVVIILIILCVMAGIIGTILLISYSIRRL
50 60 70 80
120 130 140 150
pF1KE6 IKKSPSDVKPLPSPDTDVPLSSVEIENPETSDQ
:: . .:
XP_011 IKVTALNV
90
>>NP_941391 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa)
initn: 292 init1: 231 opt: 231 Z-score: 301.2 bits: 60.8 E(85289): 4.9e-10
Smith-Waterman score: 231; 93.3% identity (95.6% similar) in 45 aa overlap (1-45:1-45)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
::::::::::::.:::::: ::: :::::::::::::::::::::
NP_941 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
NP_941 EVMLVVVGMIILISYCIR
70
>>XP_016863628 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa)
initn: 292 init1: 231 opt: 231 Z-score: 301.2 bits: 60.8 E(85289): 4.9e-10
Smith-Waterman score: 231; 93.3% identity (95.6% similar) in 45 aa overlap (1-45:1-45)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSAIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
::::::::::::.:::::: ::: :::::::::::::::::::::
XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
XP_016 EVMLVVVGMIILISYCIR
70
150 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:42:20 2016 done: Tue Nov 8 09:42:21 2016
Total Scan time: 4.350 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]