Result of FASTA (ccds) for
pFN21AE6127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6127, 138 aa
1>>>pF1KE6127 138 - 138 aa - 138 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4121+/-0.0008; mu= 9.9262+/- 0.048
mean_var=56.5933+/-11.187, 0's: 0 Z-trim(105.9): 23 B-trim: 0 in 0/50
Lambda= 0.170487
statistics sampled from 8636 (8656) to 8636 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.266), width: 16
Scan time: 1.130
The best scores are: opt bits E(32554)
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 896 228.3 1.1e-60
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 702 180.6 2.6e-46
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 338 91.1 3.3e-19
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 335 90.4 3.8e-19
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 335 90.4 3.8e-19
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 320 86.7 4.9e-18
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 314 85.2 1.4e-17
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 309 84.0 3.2e-17
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 299 81.5 2.1e-16
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 286 78.3 1.6e-15
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 283 77.6 2.8e-15
CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 ( 135) 280 76.8 4.5e-15
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 260 71.9 1.3e-13
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 244 68.0 2.4e-12
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 243 67.7 2.9e-12
CCDS3712.1 FABP2 gene_id:2169|Hs108|chr4 ( 132) 232 65.0 1.6e-11
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1202.7 bits: 228.3 E(32554): 1.1e-60
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
130
pF1KE6 ILTMTADDVVCTRVYVRE
::::::::::::::::::
CCDS11 ILTMTADDVVCTRVYVRE
130
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 604 init1: 604 opt: 702 Z-score: 944.9 bits: 180.6 E(32554): 2.6e-46
Smith-Waterman score: 702; 76.8% identity (90.6% similar) in 138 aa overlap (1-138:1-137)
10 20 30 40 50 60
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
::::.:.::. ::::.::::.::::.::::.:::::::: :::.:.:: ::::::::::
CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
:::::::::: :::.::::: :.::. ::.:::. : : ::.:.:::: :::::.:: ::
CCDS10 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND-EL
70 80 90 100 110
130
pF1KE6 ILTMTADDVVCTRVYVRE
:::. ::::::::.::::
CCDS10 ILTFGADDVVCTRIYVRE
120 130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 290 init1: 129 opt: 338 Z-score: 458.4 bits: 91.1 E(32554): 3.3e-19
Smith-Waterman score: 338; 44.2% identity (67.4% similar) in 138 aa overlap (1-135:63-193)
10 20
pF1KE6 MP-NFSGNWKIIRSENFEELLKVLGVNVML
:: .:.: ::.. .::::: :..: ::: :
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
30 40 50 60 70 80
pF1KE6 RKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQT--VDGRPCKSLVK
:::: :: :: :.:: . :.: .: :. ..:.::.::::. .: : : . :.
CCDS31 RKIA--NLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVS
100 110 120 130 140 150
90 100 110 120 130
pF1KE6 WESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE
:... :. : : ::: .::. . .: :: : : .. ::: .:.
CCDS31 WDGD-KLQCVQ---KGEKEGRGWTQWIEGD-ELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 318 init1: 179 opt: 335 Z-score: 457.3 bits: 90.4 E(32554): 3.8e-19
Smith-Waterman score: 335; 43.2% identity (75.0% similar) in 132 aa overlap (4-135:5-129)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: ..::. :.::.: .:.:::. :. :. ..::.: :.:::: :.: .:
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQ--VGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.:..::::.: :.: : :::.:. ... :.: :: .: .:...::. .::.
CCDS51 KNTEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKW---DGKETNFVREI-KDGK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
...:.: ::: .: :
CCDS51 MVMTLTFGDVVAVRHYEKA
120 130
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 325 init1: 160 opt: 335 Z-score: 457.3 bits: 90.4 E(32554): 3.8e-19
Smith-Waterman score: 335; 43.7% identity (73.3% similar) in 135 aa overlap (4-138:5-132)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: :.::.. :.::.. .: :::. :. ::. .::.. :...:: . .:: .:
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQ--VASMTKPTTIIEKNGDILTLKTHSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.::.: ::.: :.: : ::.: .. .:.: .: : .: .:. .::: ::.
CCDS34 KNTEISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWDGQETTLVRELI-DGK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
::::.: .::::.: .:
CCDS34 LILTLTHGTAVCTRTYEKEA
120 130
>>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 (135 aa)
initn: 306 init1: 165 opt: 320 Z-score: 437.2 bits: 86.7 E(32554): 4.9e-18
Smith-Waterman score: 320; 38.7% identity (72.3% similar) in 137 aa overlap (2-135:3-131)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
::..: .... ..:.:. :..:.... .::::. :: ::...:. . ..: .:
CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEE--QTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
:. ..: :: :::: ..:::: :...: :: :. .:: : ::: :. .: . : .
CCDS85 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQ---KGEVPNRGWRHWL--E
60 70 80 90 100 110
120 130
pF1KE6 GELI-LTMTADDVVCTRVYVRE
::.. : .:: :.:: .:.
CCDS85 GEMLYLELTARDAVCEQVFRKVR
120 130
>>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 (134 aa)
initn: 296 init1: 147 opt: 314 Z-score: 429.3 bits: 85.2 E(32554): 1.4e-17
Smith-Waterman score: 314; 39.3% identity (69.3% similar) in 140 aa overlap (1-137:1-133)
10 20 30 40 50
pF1KE6 MP-NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
:: ..::.: .. :.::: . .::.. ::: : :: :.:.::.: :.:....
CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKI--AKLLKPQKVIEQNGDSFTIHTNSSL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
:. ..:::::::.:.. .:.: ::::: :... ...: :: :: . .::. . .:
CCDS10 RNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDND-RLTCIQK---GEKKNRGWTHWIEGD
60 70 80 90 100 110
120 130
pF1KE6 GELILTMTADDVVCTRVYVRE
.: : : . :: ... :
CCDS10 -KLHLEMFCEGQVCKQTFQRA
120 130
>>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa)
initn: 292 init1: 162 opt: 309 Z-score: 422.8 bits: 84.0 E(32554): 3.2e-17
Smith-Waterman score: 309; 39.7% identity (69.9% similar) in 136 aa overlap (1-135:1-129)
10 20 30 40 50
pF1KE6 MPN-FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: : : :.::.. ::::.. .:.:::.. ::.. : ::.: :...:: . :.: .:
CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLA--KPTVIISKKGDIITIRTESTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.::.:.:::: :.:.: ::.: . . ... . .: .:. :.:.: :.
CCDS62 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGS----LNQVQRWDGKETTIKRKLVN-GK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
.. :::::.:
CCDS62 MVAECKMKGVVCTRIYEKV
120 130
>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa)
initn: 268 init1: 179 opt: 299 Z-score: 407.8 bits: 81.5 E(32554): 2.1e-16
Smith-Waterman score: 299; 41.6% identity (75.2% similar) in 125 aa overlap (4-128:5-120)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: ..::. :.::.: .:.:::. :. :. ..::.: :.:::: :.: .:
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQ--VGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.:..::::.: :.: : :::.:. ... :.: :: .: .:...::. .::.
CCDS83 KNTEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKW---DGKETNFVREI-KDGK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
.. :...:
CCDS83 MV--MVSNDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
120 130 140 150 160
>>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 (134 aa)
initn: 198 init1: 97 opt: 286 Z-score: 392.1 bits: 78.3 E(32554): 1.6e-15
Smith-Waterman score: 286; 36.8% identity (66.2% similar) in 136 aa overlap (5-138:6-134)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
.:.:.. .:::: .:.: .. ::::: .. ... :.::.: ::..:
CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVID--QDGDNFKTKTTSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
:. ...: :: ::.: : .:.: :.:: ::.. .:: :: :: . .: . . .:
CCDS31 RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDV-LVCVQK---GEKENRGWKQWIEGD
60 70 80 90 100 110
120 130
pF1KE6 GELILTMTADDVVCTRVYVRE
.: : .: : :: .:. ..
CCDS31 -KLYLELTCGDQVCRQVFKKK
120 130
138 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:41:08 2016 done: Tue Nov 8 09:41:09 2016
Total Scan time: 1.130 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]