FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6126, 105 aa
  1>>>pF1KE6126 105 - 105 aa - 105 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8443+/-0.000576; mu= 12.6252+/- 0.035
 mean_var=68.2159+/-13.026, 0's: 0 Z-trim(113.7): 23  B-trim: 18 in 1/49
 Lambda= 0.155286
 statistics sampled from 14313 (14333) to 14313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.44), width:  16
 Scan time:  1.020

The best scores are:                                      opt bits E(32554)
CCDS825.1 PROK1 gene_id:84432|Hs108|chr1           ( 105)  772 180.5 1.6e-46
CCDS2916.1 PROK2 gene_id:60675|Hs108|chr3          ( 108)  407 98.8 6.9e-22
CCDS46868.1 PROK2 gene_id:60675|Hs108|chr3         ( 129)  269 67.9 1.6e-12


>>CCDS825.1 PROK1 gene_id:84432|Hs108|chr1                (105 aa)
 initn: 772 init1: 772 opt: 772  Z-score: 948.5  bits: 180.5 E(32554): 1.6e-46
Smith-Waterman score: 772; 99.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KE6 MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEEC
               10        20        30        40        50        60

               70        80        90       100     
pF1KE6 HPGSHKIPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF
       ::::::.::::::::::::::::::::::::::::::::::::::
CCDS82 HPGSHKVPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF
               70        80        90       100     

>>CCDS2916.1 PROK2 gene_id:60675|Hs108|chr3               (108 aa)
 initn: 418 init1: 392 opt: 407  Z-score: 506.4  bits: 98.8 E(32554): 6.9e-22
Smith-Waterman score: 407; 54.0% identity (80.5% similar) in 87 aa overlap (10-96:18-104)

                       10        20        30        40        50  
pF1KE6         MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTP
                        .::   ..: :::::::..: :::.: :::.:.:....:.:::
CCDS29 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
               10        20        30        40        50        60

             60        70        80        90       100     
pF1KE6 LGREGEECHPGSHKIPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF
       .:. :. ::: ..:.::: .: ::::::::.: : :   .:. :         
CCDS29 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK     
               70        80        90       100             

>>CCDS46868.1 PROK2 gene_id:60675|Hs108|chr3              (129 aa)
 initn: 382 init1: 269 opt: 269  Z-score: 338.3  bits: 67.9 E(32554): 1.6e-12
Smith-Waterman score: 355; 43.5% identity (64.8% similar) in 108 aa overlap (10-96:18-125)

                       10        20        30        40        50  
pF1KE6         MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTP
                        .::   ..: :::::::..: :::.: :::.:.:....:.:::
CCDS46 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
               10        20        30        40        50        60

             60                             70        80        90 
pF1KE6 LGREGEECHPGSHK---------------------IPFFRKRKHHTCPCLPNLLCSRFPD
       .:. :. ::: ..:                     .::: .: ::::::::.: : :   
CCDS46 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF
               70        80        90       100       110       120

             100     
pF1KE6 GRYRCSMDLKNINF
       .:. :         
CCDS46 NRFICLAQK     
                     




105 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:40:41 2016 done: Tue Nov  8 09:40:41 2016
 Total Scan time:  1.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]