FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6124, 154 aa
  1>>>pF1KE6124 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6492+/-0.000649; mu= 3.3361+/- 0.039
 mean_var=149.2356+/-30.005, 0's: 0 Z-trim(116.8): 5  B-trim: 0 in 0/52
 Lambda= 0.104988
 statistics sampled from 17476 (17480) to 17476 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.537), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS45771.1 HN1 gene_id:51155|Hs108|chr17          ( 154) 1030 165.9 8.7e-42
CCDS45772.1 HN1 gene_id:51155|Hs108|chr17          ( 108)  720 118.9 8.9e-28
CCDS32729.1 HN1 gene_id:51155|Hs108|chr17          ( 181)  649 108.3 2.3e-24


>>CCDS45771.1 HN1 gene_id:51155|Hs108|chr17               (154 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 863.7  bits: 165.9 E(32554): 8.7e-42
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE6 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSE
               70        80        90       100       110       120

              130       140       150    
pF1KE6 EKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG
       ::::::::::::::::::::::::::::::::::
CCDS45 EKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG
              130       140       150    

>>CCDS45772.1 HN1 gene_id:51155|Hs108|chr17               (108 aa)
 initn: 720 init1: 720 opt: 720  Z-score: 612.2  bits: 118.9 E(32554): 8.9e-28
Smith-Waterman score: 720; 100.0% identity (100.0% similar) in 108 aa overlap (47-154:1-108)

         20        30        40        50        60        70      
pF1KE6 SSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQASWAKSAGAKSSGGRED
                                     ::::::::::::::::::::::::::::::
CCDS45                               MASNIFGTPEENQASWAKSAGAKSSGGRED
                                             10        20        30

         80        90       100       110       120       130      
pF1KE6 LESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPA
               40        50        60        70        80        90

        140       150    
pF1KE6 PVPSRRNPPGGKSSLVLG
       ::::::::::::::::::
CCDS45 PVPSRRNPPGGKSSLVLG
              100        

>>CCDS32729.1 HN1 gene_id:51155|Hs108|chr17               (181 aa)
 initn: 649 init1: 649 opt: 649  Z-score: 550.8  bits: 108.3 E(32554): 2.3e-24
Smith-Waterman score: 649; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE6 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSE
       :::::::::::::::::::::::::::::::::::::::                     
CCDS32 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKKMWTQTCQAAWGRVKRSPCLL
               70        80        90       100       110       120

              130       140       150                              
pF1KE6 EKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG                          
                                                                   
CCDS32 RLCPARWPRPQCHPEEIPLAASPASSWVSSDCPERCRSVCFLHACELHNLSLTVHLLDLF
              130       140       150       160       170       180




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:39:40 2016 done: Tue Nov  8 09:39:40 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]