FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6123, 151 aa
  1>>>pF1KE6123 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2415+/-0.000622; mu= 12.8285+/- 0.038
 mean_var=66.5427+/-13.166, 0's: 0 Z-trim(111.8): 3  B-trim: 0 in 0/51
 Lambda= 0.157226
 statistics sampled from 12655 (12656) to 12655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.389), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS32121.1 NPC2 gene_id:10577|Hs108|chr14         ( 151) 1025 240.3 3.4e-64


>>CCDS32121.1 NPC2 gene_id:10577|Hs108|chr14              (151 aa)
 initn: 1025 init1: 1025 opt: 1025  Z-score: 1265.9  bits: 240.3 E(32554): 3.4e-64
Smith-Waterman score: 1025; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE6 MRFLAATFLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRFLAATFLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYP
               70        80        90       100       110       120

              130       140       150 
pF1KE6 SIKLVVEWQLQDDKNQSLFCWEIPVQIVSHL
       :::::::::::::::::::::::::::::::
CCDS32 SIKLVVEWQLQDDKNQSLFCWEIPVQIVSHL
              130       140       150 




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:39:05 2016 done: Tue Nov  8 09:39:05 2016
 Total Scan time:  1.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]