FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6122, 86 aa
  1>>>pF1KE6122 86 - 86 aa - 86 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7864+/-0.000563; mu= 10.6051+/- 0.034
 mean_var=53.7030+/-10.618, 0's: 0 Z-trim(111.9): 7  B-trim: 0 in 0/50
 Lambda= 0.175015
 statistics sampled from 12708 (12715) to 12708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.391), width:  16
 Scan time:  0.950

The best scores are:                                      opt bits E(32554)
CCDS12469.1 COX6B1 gene_id:1340|Hs108|chr19        (  86)  632 166.6 1.8e-42
CCDS42630.1 COX6B2 gene_id:125965|Hs108|chr19      (  88)  344 93.8 1.4e-20


>>CCDS12469.1 COX6B1 gene_id:1340|Hs108|chr19             (86 aa)
 initn: 632 init1: 632 opt: 632  Z-score: 876.2  bits: 166.6 E(32554): 1.8e-42
Smith-Waterman score: 632; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE6 MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRV
               10        20        30        40        50        60

               70        80      
pF1KE6 YQSLCPTSWVTDWDEQRAEGTFPGKI
       ::::::::::::::::::::::::::
CCDS12 YQSLCPTSWVTDWDEQRAEGTFPGKI
               70        80      

>>CCDS42630.1 COX6B2 gene_id:125965|Hs108|chr19           (88 aa)
 initn: 341 init1: 341 opt: 344  Z-score: 483.0  bits: 93.8 E(32554): 1.4e-20
Smith-Waterman score: 344; 54.8% identity (75.0% similar) in 84 aa overlap (3-86:5-88)

                 10        20        30        40        50        
pF1KE6   MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQ
           : .:    ...: ::: :::.::: :::.::.::.::: :. : .: . . ::.: 
CCDS42 MLDVEAQEPPKGKWSTPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYF
               10        20        30        40        50        60

       60        70        80      
pF1KE6 RVYQSLCPTSWVTDWDEQRAEGTFPGKI
       :::.:::: ::: .:.::  .: : :::
CCDS42 RVYHSLCPISWVESWNEQIKNGIFAGKI
               70        80        




86 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:38:33 2016 done: Tue Nov  8 09:38:33 2016
 Total Scan time:  0.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]