Result of FASTA (ccds) for
pFN21AE6121
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6121, 135 aa
1>>>pF1KE6121 135 - 135 aa - 135 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9945+/-0.000759; mu= 12.2129+/- 0.046
mean_var=55.6183+/-11.122, 0's: 0 Z-trim(106.9): 21 B-trim: 0 in 0/49
Lambda= 0.171975
statistics sampled from 9253 (9271) to 9253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.285), width: 16
Scan time: 1.430
The best scores are: opt bits E(32554)
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 915 234.7 1.3e-62
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 548 143.7 4.7e-35
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 485 128.0 1.7e-30
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 460 121.8 1.3e-28
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 346 93.6 4.6e-20
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 345 93.3 5.6e-20
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 320 87.1 3.7e-18
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 297 81.4 1.9e-16
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 270 74.7 1.9e-14
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 265 73.4 4.5e-14
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 238 66.7 4.7e-12
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 231 65.0 1.7e-11
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 229 64.5 2.7e-11
>>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 (135 aa)
initn: 915 init1: 915 opt: 915 Z-score: 1237.5 bits: 234.7 E(32554): 1.3e-62
Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)
10 20 30 40 50 60
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
70 80 90 100 110 120
130
pF1KE6 TARDAVCEQVFRKVR
:::::::::::::::
CCDS85 TARDAVCEQVFRKVR
130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 587 init1: 548 opt: 548 Z-score: 742.8 bits: 143.7 E(32554): 4.7e-35
Smith-Waterman score: 548; 55.6% identity (86.7% similar) in 135 aa overlap (1-135:63-197)
10 20 30
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV
:: ..:::.... ..:.:.::.::....:.
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE
:::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.: :.:.
CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
100 110 120 130 140 150
100 110 120 130
pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR
..: :::::: .::: .:.::. :.::. .. .::.:::.::.
CCDS31 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 (134 aa)
initn: 498 init1: 485 opt: 485 Z-score: 660.9 bits: 128.0 E(32554): 1.7e-30
Smith-Waterman score: 485; 49.6% identity (82.7% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
:: .:.: . ..:. :.: :. ::.:..:.:::: ::::.: ::..:. .:..: :..::
CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
: :.: :: ::.:: :..:.:::...: :....:.:.:::: :::: ::.::. :.::.
CCDS10 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
70 80 90 100 110 120
130
pF1KE6 TARDAVCEQVFRKVR
. ::.:.:..
CCDS10 FCEGQVCKQTFQRA
130
>>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 (134 aa)
initn: 437 init1: 421 opt: 460 Z-score: 627.4 bits: 121.8 E(32554): 1.3e-28
Smith-Waterman score: 460; 51.1% identity (80.5% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
: . .: ... :..:.: :..::.:..:.::::. : : :...:... ..: :::::
CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
: :.: :::::.: .:.:.:. ...:::: . :::::::: ::::..:.::. :::::
CCDS31 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
70 80 90 100 110 120
130
pF1KE6 TARDAVCEQVFRKVR
: : ::.:::.:
CCDS31 TCGDQVCRQVFKKK
130
>>CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 (153 aa)
initn: 371 init1: 346 opt: 346 Z-score: 473.7 bits: 93.6 E(32554): 4.6e-20
Smith-Waterman score: 346; 57.6% identity (89.4% similar) in 85 aa overlap (1-85:63-147)
10 20 30
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV
:: ..:::.... ..:.:.::.::....:.
CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE
:::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::..
CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMSETGFS
100 110 120 130 140 150
100 110 120 130
pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR
CCDS46 S
>>CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 (157 aa)
initn: 370 init1: 345 opt: 345 Z-score: 472.2 bits: 93.3 E(32554): 5.6e-20
Smith-Waterman score: 345; 57.5% identity (88.5% similar) in 87 aa overlap (1-87:63-149)
10 20 30
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV
:: ..:::.... ..:.:.::.::....:.
CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE
:::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.. :
CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMAGVQSR
100 110 120 130 140 150
100 110 120 130
pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR
CCDS46 DLSSL
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 306 init1: 165 opt: 320 Z-score: 439.5 bits: 87.1 E(32554): 3.7e-18
Smith-Waterman score: 320; 38.7% identity (72.3% similar) in 137 aa overlap (3-131:2-135)
10 20 30 40 50
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF
::..: .... ..:.:. :..:.... .::::. :: ::...:. . ..: .:
CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQK---GEVPNRGWRHWL--E
:. ..: :: :::: ..:::: :...: :: :. .:: :: :: :. .: . : .
CCDS11 RTTEINFKVGEEFEE--QTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
60 70 80 90 100 110
120 130
pF1KE6 GEMLYLELTARDAVCEQVFRKVR
::.. : .:: :.:: .:.
CCDS11 GELI-LTMTADDVVCTRVYVRE
120 130
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 169 init1: 157 opt: 297 Z-score: 408.7 bits: 81.4 E(32554): 1.9e-16
Smith-Waterman score: 297; 34.8% identity (71.9% similar) in 135 aa overlap (3-131:2-134)
10 20 30 40 50
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF
::..: ... :..:... :.::... .::.:. :: ::...:... ..: .:
CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLV-CVQ---KGEVPNRGWRHWLEGE
:. ..: :: :::. .::::::....:::.:. . :.: .:. :. : . : ..
CCDS10 RTTEINFKVGEGFEEE--TVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND
60 70 80 90 100 110
120 130
pF1KE6 MLYLELTARDAVCEQVFRKVR
: : . : :.:: ...
CCDS10 ELILTFGADDVVCTRIYVRE
120 130
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 237 init1: 182 opt: 270 Z-score: 372.7 bits: 74.7 E(32554): 1.9e-14
Smith-Waterman score: 270; 35.1% identity (71.6% similar) in 134 aa overlap (1-133:1-131)
10 20 30 40 50 60
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
: . : ...:..::..::...:....:.:..: . :: ::..:. .:..: :::.:
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGW-RHWLEGEMLYLE
..: .::::.: ..: :: ..::: . .:: .:: . . :. ..:... :
CCDS34 TEISFKLGVEFDET--TADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLI-LT
70 80 90 100 110
120 130
pF1KE6 LTARDAVCEQVFRKVR
:: ::: ....:
CCDS34 LTHGTAVCTRTYEKEA
120 130
>>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa)
initn: 266 init1: 203 opt: 265 Z-score: 366.1 bits: 73.4 E(32554): 4.5e-14
Smith-Waterman score: 265; 35.6% identity (70.4% similar) in 135 aa overlap (1-134:1-132)
10 20 30 40 50 60
pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
: .. : ...::..:..::..::...::.::.. : :: : ..:. .:.:: :::.:
CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGW-RHWLEGEMLYLE
..: .: :::: ..:.:: ..::: .. : ::. . . :. ..:.:. :
CCDS62 TEISFKLGQEFEE--TTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVA-E
70 80 90 100 110
120 130
pF1KE6 LTARDAVCEQVFRKVR
. .:: ....::
CCDS62 CKMKGVVCTRIYEKV
120 130
135 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:38:03 2016 done: Tue Nov 8 09:38:03 2016
Total Scan time: 1.430 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]