FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6121, 135 aa 1>>>pF1KE6121 135 - 135 aa - 135 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9945+/-0.000759; mu= 12.2129+/- 0.046 mean_var=55.6183+/-11.122, 0's: 0 Z-trim(106.9): 21 B-trim: 0 in 0/49 Lambda= 0.171975 statistics sampled from 9253 (9271) to 9253 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.285), width: 16 Scan time: 1.430 The best scores are: opt bits E(32554) CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 915 234.7 1.3e-62 CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 548 143.7 4.7e-35 CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 485 128.0 1.7e-30 CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 460 121.8 1.3e-28 CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 346 93.6 4.6e-20 CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 345 93.3 5.6e-20 CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 320 87.1 3.7e-18 CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 297 81.4 1.9e-16 CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 270 74.7 1.9e-14 CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 265 73.4 4.5e-14 CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 238 66.7 4.7e-12 CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 231 65.0 1.7e-11 CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 229 64.5 2.7e-11 >>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 (135 aa) initn: 915 init1: 915 opt: 915 Z-score: 1237.5 bits: 234.7 E(32554): 1.3e-62 Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL 70 80 90 100 110 120 130 pF1KE6 TARDAVCEQVFRKVR ::::::::::::::: CCDS85 TARDAVCEQVFRKVR 130 >>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa) initn: 587 init1: 548 opt: 548 Z-score: 742.8 bits: 143.7 E(32554): 4.7e-35 Smith-Waterman score: 548; 55.6% identity (86.7% similar) in 135 aa overlap (1-135:63-197) 10 20 30 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV :: ..:::.... ..:.:.::.::....:. CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE :::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.: :.:. CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD 100 110 120 130 140 150 100 110 120 130 pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR ..: :::::: .::: .:.::. :.::. .. .::.:::.::. CCDS31 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ 160 170 180 190 >>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 (134 aa) initn: 498 init1: 485 opt: 485 Z-score: 660.9 bits: 128.0 E(32554): 1.7e-30 Smith-Waterman score: 485; 49.6% identity (82.7% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN :: .:.: . ..:. :.: :. ::.:..:.:::: ::::.: ::..:. .:..: :..:: CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL : :.: :: ::.:: :..:.:::...: :....:.:.:::: :::: ::.::. :.::. CCDS10 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM 70 80 90 100 110 120 130 pF1KE6 TARDAVCEQVFRKVR . ::.:.:.. CCDS10 FCEGQVCKQTFQRA 130 >>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 (134 aa) initn: 437 init1: 421 opt: 460 Z-score: 627.4 bits: 121.8 E(32554): 1.3e-28 Smith-Waterman score: 460; 51.1% identity (80.5% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN : . .: ... :..:.: :..::.:..:.::::. : : :...:... ..: ::::: CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL : :.: :::::.: .:.:.:. ...:::: . :::::::: ::::..:.::. ::::: CCDS31 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL 70 80 90 100 110 120 130 pF1KE6 TARDAVCEQVFRKVR : : ::.:::.: CCDS31 TCGDQVCRQVFKKK 130 >>CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 (153 aa) initn: 371 init1: 346 opt: 346 Z-score: 473.7 bits: 93.6 E(32554): 4.6e-20 Smith-Waterman score: 346; 57.6% identity (89.4% similar) in 85 aa overlap (1-85:63-147) 10 20 30 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV :: ..:::.... ..:.:.::.::....:. CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE :::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.. CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMSETGFS 100 110 120 130 140 150 100 110 120 130 pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR CCDS46 S >>CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 (157 aa) initn: 370 init1: 345 opt: 345 Z-score: 472.2 bits: 93.3 E(32554): 5.6e-20 Smith-Waterman score: 345; 57.5% identity (88.5% similar) in 87 aa overlap (1-87:63-149) 10 20 30 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAV :: ..:::.... ..:.:.::.::....:. CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 RKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWE :::: :::::::: ..:.:: .::::::::: ..:.:: :::::: ..: :::.. : CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMAGVQSR 100 110 120 130 140 150 100 110 120 130 pF1KE6 EEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFRKVR CCDS46 DLSSL >>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa) initn: 306 init1: 165 opt: 320 Z-score: 439.5 bits: 87.1 E(32554): 3.7e-18 Smith-Waterman score: 320; 38.7% identity (72.3% similar) in 137 aa overlap (3-131:2-135) 10 20 30 40 50 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF ::..: .... ..:.:. :..:.... .::::. :: ::...:. . ..: .: CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQK---GEVPNRGWRHWL--E :. ..: :: :::: ..:::: :...: :: :. .:: :: :: :. .: . : . CCDS11 RTTEINFKVGEEFEE--QTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND 60 70 80 90 100 110 120 130 pF1KE6 GEMLYLELTARDAVCEQVFRKVR ::.. : .:: :.:: .:. CCDS11 GELI-LTMTADDVVCTRVYVRE 120 130 >>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa) initn: 169 init1: 157 opt: 297 Z-score: 408.7 bits: 81.4 E(32554): 1.9e-16 Smith-Waterman score: 297; 34.8% identity (71.9% similar) in 135 aa overlap (3-131:2-134) 10 20 30 40 50 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF ::..: ... :..:... :.::... .::.:. :: ::...:... ..: .: CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLV-CVQ---KGEVPNRGWRHWLEGE :. ..: :: :::. .::::::....:::.:. . :.: .:. :. : . : .. CCDS10 RTTEINFKVGEGFEEE--TVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND 60 70 80 90 100 110 120 130 pF1KE6 MLYLELTARDAVCEQVFRKVR : : . : :.:: ... CCDS10 ELILTFGADDVVCTRIYVRE 120 130 >>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa) initn: 237 init1: 182 opt: 270 Z-score: 372.7 bits: 74.7 E(32554): 1.9e-14 Smith-Waterman score: 270; 35.1% identity (71.6% similar) in 134 aa overlap (1-133:1-131) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN : . : ...:..::..::...:....:.:..: . :: ::..:. .:..: :::.: CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGW-RHWLEGEMLYLE ..: .::::.: ..: :: ..::: . .:: .:: . . :. ..:... : CCDS34 TEISFKLGVEFDET--TADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLI-LT 70 80 90 100 110 120 130 pF1KE6 LTARDAVCEQVFRKVR :: ::: ....: CCDS34 LTHGTAVCTRTYEKEA 120 130 >>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa) initn: 266 init1: 203 opt: 265 Z-score: 366.1 bits: 73.4 E(32554): 4.5e-14 Smith-Waterman score: 265; 35.6% identity (70.4% similar) in 135 aa overlap (1-134:1-132) 10 20 30 40 50 60 pF1KE6 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN : .. : ...::..:..::..::...::.::.. : :: : ..:. .:.:: :::.: CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGW-RHWLEGEMLYLE ..: .: :::: ..:.:: ..::: .. : ::. . . :. ..:.:. : CCDS62 TEISFKLGQEFEE--TTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVA-E 70 80 90 100 110 120 130 pF1KE6 LTARDAVCEQVFRKVR . .:: ....:: CCDS62 CKMKGVVCTRIYEKV 120 130 135 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:38:03 2016 done: Tue Nov 8 09:38:03 2016 Total Scan time: 1.430 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]