FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6116, 146 aa
  1>>>pF1KE6116 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7351+/-0.00068; mu= 15.6487+/- 0.041
 mean_var=73.8571+/-14.385, 0's: 0 Z-trim(111.2): 36  B-trim: 0 in 0/51
 Lambda= 0.149238
 statistics sampled from 12144 (12178) to 12144 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.374), width:  16
 Scan time:  1.380

The best scores are:                                      opt bits E(32554)
CCDS33192.1 MCFD2 gene_id:90411|Hs108|chr2         ( 146)  988 220.9 2.2e-58
CCDS54355.1 MCFD2 gene_id:90411|Hs108|chr2         ( 127)  639 145.7 8.3e-36
CCDS54354.1 MCFD2 gene_id:90411|Hs108|chr2         (  94)  623 142.1 7.3e-35


>>CCDS33192.1 MCFD2 gene_id:90411|Hs108|chr2              (146 aa)
 initn: 988 init1: 988 opt: 988  Z-score: 1161.6  bits: 220.9 E(32554): 2.2e-58
Smith-Waterman score: 988; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KE6 MTMRSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTMRSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINI
               70        80        90       100       110       120

              130       140      
pF1KE6 IDGVLRDDDKNNDGYIDYAEFAKSLQ
       ::::::::::::::::::::::::::
CCDS33 IDGVLRDDDKNNDGYIDYAEFAKSLQ
              130       140      

>>CCDS54355.1 MCFD2 gene_id:90411|Hs108|chr2              (127 aa)
 initn: 639 init1: 639 opt: 639  Z-score: 756.3  bits: 145.7 E(32554): 8.3e-36
Smith-Waterman score: 639; 87.6% identity (92.0% similar) in 113 aa overlap (34-146:15-127)

            10        20        30        40        50        60   
pF1KE6 RSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKP
                                     ::  :    ....   .:::::::::::::
CCDS54                 MLSVCSCRTSSGMRSQWPSARQRSSSLSTFRHIMEHLEGVINKP
                               10        20        30        40    

            70        80        90       100       110       120   
pF1KE6 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG
           50        60        70        80        90       100    

           130       140      
pF1KE6 VLRDDDKNNDGYIDYAEFAKSLQ
       :::::::::::::::::::::::
CCDS54 VLRDDDKNNDGYIDYAEFAKSLQ
          110       120       

>>CCDS54354.1 MCFD2 gene_id:90411|Hs108|chr2              (94 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 739.3  bits: 142.1 E(32554): 7.3e-35
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 94 aa overlap (53-146:1-94)

             30        40        50        60        70        80  
pF1KE6 GARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDY
                                     ::::::::::::::::::::::::::::::
CCDS54                               MEHLEGVINKPEAEMSPQELQLHYFKMHDY
                                             10        20        30

             90       100       110       120       130       140  
pF1KE6 DGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFA
               40        50        60        70        80        90

           
pF1KE6 KSLQ
       ::::
CCDS54 KSLQ
           




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:35:06 2016 done: Tue Nov  8 09:35:07 2016
 Total Scan time:  1.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]