FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6114, 167 aa
  1>>>pF1KE6114 167 - 167 aa - 167 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7880+/-0.00027; mu= 15.8800+/- 0.017
 mean_var=64.9658+/-13.508, 0's: 0 Z-trim(119.7): 31  B-trim: 3260 in 2/55
 Lambda= 0.159123
 statistics sampled from 34075 (34107) to 34075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.4), width:  16
 Scan time:  5.750

The best scores are:                                      opt bits E(85289)
NP_003664 (OMIM: 601954,604488,607487) telethonin  ( 167) 1132 267.5   7e-72


>>NP_003664 (OMIM: 601954,604488,607487) telethonin [Hom  (167 aa)
 initn: 1132 init1: 1132 opt: 1132  Z-score: 1411.5  bits: 267.5 E(85289): 7e-72
Smith-Waterman score: 1132; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KE6 MATSELSCEVSEENCERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHQQGQCQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MATSELSCEVSEENCERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHQQGQCQVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE
               70        80        90       100       110       120

              130       140       150       160       
pF1KE6 TALGGQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TALGGQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG
              130       140       150       160       




167 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:34:12 2016 done: Tue Nov  8 09:34:13 2016
 Total Scan time:  5.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]