FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6109, 150 aa
  1>>>pF1KE6109 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1951+/-0.000651; mu= 11.6576+/- 0.039
 mean_var=52.2997+/-10.520, 0's: 0 Z-trim(109.1): 9  B-trim: 0 in 0/49
 Lambda= 0.177347
 statistics sampled from 10647 (10649) to 10647 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS10273.1 COX5A gene_id:9377|Hs108|chr15         ( 150)  999 262.9 5.4e-71


>>CCDS10273.1 COX5A gene_id:9377|Hs108|chr15              (150 aa)
 initn: 999 init1: 999 opt: 999  Z-score: 1388.0  bits: 262.9 E(32554): 5.4e-71
Smith-Waterman score: 999; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE6 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK
               70        80        90       100       110       120

              130       140       150
pF1KE6 EIYPYVIQELRPTLNELGISTPEELGLDKV
       ::::::::::::::::::::::::::::::
CCDS10 EIYPYVIQELRPTLNELGISTPEELGLDKV
              130       140       150




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:31:27 2016 done: Tue Nov  8 09:31:28 2016
 Total Scan time:  1.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]