FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6103, 135 aa
  1>>>pF1KE6103 135 - 135 aa - 135 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7484+/-0.000297; mu= 13.8539+/- 0.018
 mean_var=53.9183+/-10.606, 0's: 0 Z-trim(116.9): 29  B-trim: 316 in 2/59
 Lambda= 0.174665
 statistics sampled from 28392 (28421) to 28392 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.333), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(85289)
NP_001008389 (OMIM: 604928,611507) CDGSH iron-sulf ( 135)  894 232.5 1.6e-61
NP_060934 (OMIM: 611932) CDGSH iron-sulfur domain- ( 108)  380 102.9 1.3e-22
XP_016871898 (OMIM: 611932) PREDICTED: CDGSH iron- ( 150)  378 102.5 2.4e-22


>>NP_001008389 (OMIM: 604928,611507) CDGSH iron-sulfur d  (135 aa)
 initn: 894 init1: 894 opt: 894  Z-score: 1225.5  bits: 232.5 E(85289): 1.6e-61
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KE6 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL
               70        80        90       100       110       120

              130     
pF1KE6 TGDNVGPLILKKKEV
       :::::::::::::::
NP_001 TGDNVGPLILKKKEV
              130     

>>NP_060934 (OMIM: 611932) CDGSH iron-sulfur domain-cont  (108 aa)
 initn: 340 init1: 252 opt: 380  Z-score: 526.9  bits: 102.9 E(85289): 1.3e-22
Smith-Waterman score: 380; 54.1% identity (78.0% similar) in 109 aa overlap (26-134:2-107)

               10        20        30        40        50        60
pF1KE6 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL
                                :.:. . . : ::.  . . .  : .:::: . : 
NP_060                         MSLTSSSSVRV-EWIAAVTIAAGTAAIGYLAYKRFY
                                       10         20        30     

               70        80        90       100       110       120
pF1KE6 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL
        : ...: ..:::.:::.:::.:. ...:::   ::.:::::::: :: :::.:.:::: 
NP_060 VKDHRNK-AMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEE
          40         50        60         70        80        90   

              130     
pF1KE6 TGDNVGPLILKKKEV
       :::::::::.:::: 
NP_060 TGDNVGPLIIKKKET
           100        

>>XP_016871898 (OMIM: 611932) PREDICTED: CDGSH iron-sulf  (150 aa)
 initn: 340 init1: 252 opt: 378  Z-score: 522.1  bits: 102.5 E(85289): 2.4e-22
Smith-Waterman score: 378; 57.1% identity (79.6% similar) in 98 aa overlap (37-134:54-149)

         10        20        30        40        50        60      
pF1KE6 ARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQ
                                     ::.  . . .  : .:::: . :  : ...
XP_016 HAGNRQLSSEAEANQIMQNFLLSNIAWSWVEWIAAVTIAAGTAAIGYLAYKRFYVKDHRN
            30        40        50        60        70        80   

         70        80        90       100       110       120      
pF1KE6 KDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVG
       : ..:::.:::.:::.:. ...:::   ::.:::::::: :: :::.:.:::: ::::::
XP_016 K-AMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVG
             90       100        110       120       130       140 

        130     
pF1KE6 PLILKKKEV
       :::.:::: 
XP_016 PLIIKKKET
             150




135 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:28:53 2016 done: Tue Nov  8 09:28:53 2016
 Total Scan time:  3.700 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]