FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6101, 103 aa
  1>>>pF1KE6101 103 - 103 aa - 103 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1763+/-0.000566; mu= 9.8865+/- 0.034
 mean_var=46.4763+/- 9.318, 0's: 0 Z-trim(110.3): 4  B-trim: 0 in 0/52
 Lambda= 0.188130
 statistics sampled from 11521 (11524) to 11521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS8397.1 ATP5L gene_id:10632|Hs108|chr11         ( 103)  655 184.3 1.2e-47
CCDS54534.1 ATP5L2 gene_id:267020|Hs108|chr22      ( 100)  558 158.0 9.5e-40


>>CCDS8397.1 ATP5L gene_id:10632|Hs108|chr11              (103 aa)
 initn: 655 init1: 655 opt: 655  Z-score: 969.2  bits: 184.3 E(32554): 1.2e-47
Smith-Waterman score: 655; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KE6 MAQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MAQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSA
               10        20        30        40        50        60

               70        80        90       100   
pF1KE6 QTGSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV
       :::::::::::::::::::::::::::::::::::::::::::
CCDS83 QTGSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV
               70        80        90       100   

>>CCDS54534.1 ATP5L2 gene_id:267020|Hs108|chr22           (100 aa)
 initn: 558 init1: 558 opt: 558  Z-score: 827.1  bits: 158.0 E(32554): 9.5e-40
Smith-Waterman score: 558; 89.0% identity (93.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE6 MAQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSA
       :: ::::::::::::::::::: :::::.::::. ::::::::::::::::::::::.::
CCDS54 MAPFVRNLVEKTPALVNAAVTYLKPRLAAFWYYTTVELVPPTPAEIPRAIQSLKKIVSSA
               10        20        30        40        50        60

               70        80        90       100   
pF1KE6 QTGSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV
       :::::::::::::.:::::::::  :::: :: :::::::   
CCDS54 QTGSFKQLTVKEALLNGLVATEVSTWFYVREITGKRGIIG   
               70        80        90       100   




103 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:27:43 2016 done: Tue Nov  8 09:27:43 2016
 Total Scan time:  1.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]