Result of FASTA (ccds) for
pFN21AE5824
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5824, 1092 aa
1>>>pF1KE5824 1092 - 1092 aa - 1092 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8575+/-0.000951; mu= 10.6819+/- 0.058
mean_var=124.0374+/-24.629, 0's: 0 Z-trim(109.8): 13 B-trim: 0 in 0/51
Lambda= 0.115159
statistics sampled from 11120 (11124) to 11120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.342), width: 16
Scan time: 5.050
The best scores are: opt bits E(32554)
CCDS9336.1 USPL1 gene_id:10208|Hs108|chr13 (1092) 7247 1215.7 0
CCDS81760.1 USPL1 gene_id:10208|Hs108|chr13 ( 763) 5041 849.1 0
>>CCDS9336.1 USPL1 gene_id:10208|Hs108|chr13 (1092 aa)
initn: 7247 init1: 7247 opt: 7247 Z-score: 6506.4 bits: 1215.7 E(32554): 0
Smith-Waterman score: 7247; 99.8% identity (99.9% similar) in 1092 aa overlap (1-1092:1-1092)
10 20 30 40 50 60
pF1KE5 MMDSPKIGNGLPVIGPGTDIGISSLHMVGYLGKNFDSAKVPSDEYCPACREKGKLKALKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MMDSPKIGNGLPVIGPGTDIGISSLHMVGYLGKNFDSAKVPSDEYCPACREKGKLKALKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YRISFQESIFLCEDLQCIYPLGSKSLNNLISPDLEECHTPHKPQKRKSLESSYKDSLLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 YRISFQESIFLCEDLQCIYPLGSKSLNNLISPDLEECHTPHKPQKRKSLESSYKDSLLLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NSKKTRNYIAIDGGKVLNSKHNGEVYDETSSNLPDSSGQQNPIRTADSLERNEILEADTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NSKKTRNYIAIDGGKVLNSKHNGEVYDETSSNLPDSSGQQNPIRTADSLERNEILEADTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DMATTKDPATVDVSGTGRPSPQNEGCTSKLEMPLESKCTSFPQALCVQWKNAYALCWLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DMATTKDPATVDVSGTGRPSPQNEGCTSKLEMPLESKCTSFPQALCVQWKNAYALCWLDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 ILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 FAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 FAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 CSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 CSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFML
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 HFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 RHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSSTSCSVGDAA
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS93 RHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSLTSCSVGDAA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 SAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVSQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 LNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVVN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 TNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVTS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE5 QVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHNR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE5 NTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTAA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE5 HPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAEK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE5 KKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIANESACTTVPGV
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS93 KKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIASESACTTVPGV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE5 SLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTHL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE5 RQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTLD
1030 1040 1050 1060 1070 1080
1090
pF1KE5 LPHFDEYLFENY
::::::::::::
CCDS93 LPHFDEYLFENY
1090
>>CCDS81760.1 USPL1 gene_id:10208|Hs108|chr13 (763 aa)
initn: 5041 init1: 5041 opt: 5041 Z-score: 4528.2 bits: 849.1 E(32554): 0
Smith-Waterman score: 5041; 99.7% identity (99.9% similar) in 763 aa overlap (330-1092:1-763)
300 310 320 330 340 350
pF1KE5 IFAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDF
::::::::::::::::::::::::::::::
CCDS81 MESPVFAFPLLLKLETHIEKLFLYSFSWDF
10 20 30
360 370 380 390 400 410
pF1KE5 ECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFM
40 50 60 70 80 90
420 430 440 450 460 470
pF1KE5 LHFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCS
100 110 120 130 140 150
480 490 500 510 520 530
pF1KE5 ERHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSSTSCSVGDA
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS81 ERHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSLTSCSVGDA
160 170 180 190 200 210
540 550 560 570 580 590
pF1KE5 ASAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ASAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVS
220 230 240 250 260 270
600 610 620 630 640 650
pF1KE5 QLNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QLNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVV
280 290 300 310 320 330
660 670 680 690 700 710
pF1KE5 NTNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NTNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVT
340 350 360 370 380 390
720 730 740 750 760 770
pF1KE5 SQVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SQVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHN
400 410 420 430 440 450
780 790 800 810 820 830
pF1KE5 RNTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RNTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTA
460 470 480 490 500 510
840 850 860 870 880 890
pF1KE5 AHPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AHPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAE
520 530 540 550 560 570
900 910 920 930 940 950
pF1KE5 KKKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIANESACTTVPG
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS81 KKKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIASESACTTVPG
580 590 600 610 620 630
960 970 980 990 1000 1010
pF1KE5 VSLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VSLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTH
640 650 660 670 680 690
1020 1030 1040 1050 1060 1070
pF1KE5 LRQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LRQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTL
700 710 720 730 740 750
1080 1090
pF1KE5 DLPHFDEYLFENY
:::::::::::::
CCDS81 DLPHFDEYLFENY
760
1092 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:58:26 2016 done: Tue Nov 8 06:58:27 2016
Total Scan time: 5.050 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]