Result of FASTA (ccds) for
pFN21AE5819
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5819, 1063 aa
1>>>pF1KE5819 1063 - 1063 aa - 1063 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2660+/-0.00105; mu= 4.5359+/- 0.063
mean_var=225.5790+/-45.983, 0's: 0 Z-trim(111.6): 15 B-trim: 3 in 1/52
Lambda= 0.085394
statistics sampled from 12468 (12476) to 12468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.383), width: 16
Scan time: 4.560
The best scores are: opt bits E(32554)
CCDS11772.1 RNF213 gene_id:57674|Hs108|chr17 (1063) 7201 901.0 0
CCDS58606.1 RNF213 gene_id:57674|Hs108|chr17 (5207) 6841 857.1 0
>>CCDS11772.1 RNF213 gene_id:57674|Hs108|chr17 (1063 aa)
initn: 7201 init1: 7201 opt: 7201 Z-score: 4806.0 bits: 901.0 E(32554): 0
Smith-Waterman score: 7201; 99.8% identity (99.8% similar) in 1063 aa overlap (1-1063:1-1063)
10 20 30 40 50 60
pF1KE5 MECPSCQHVSKEETPKFCSQCGERLPPAAPIADSENNNSTMASASEGEMECGQELKEEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MECPSCQHVSKEETPKFCSQCGERLPPAAPIADSENNNSTMASASEGEMECGQELKEEGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PCLFPGSDSWQENPEEPCSKASWTVQESKKKKRKKKKKGNKSASSELASLPLSPASPCHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PCLFPGSDSWQENPEEPCSKASWTVQESKKKKRKKKKKGNKSASSELASLPLSPASPCHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 TLLSNPWPQDTALPHSQAQQSGPTGQPSQPPGTATTPLEGDGLSAPTEVGDSPLQAQALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLLSNPWPQDTALPHSQAQQSGPTGQPSQPPGTATTPLEGDGLSAPTEVGDSPLQAQALG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 EAGVATGSEAQSSPQFQDHTEGEDQDASIPSGGRGLSQEGTGPPTSAGEGHSRTEDAAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAGVATGSEAQSSPQFQDHTEGEDQDASIPSGGRGLSQEGTGPPTSAGEGHSRTEDAAQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 LLLPESKGGSSEPGTELQTTEQQAGASASTAVDAVAEPANAVKGAGKEMKEKTQRMKQPP
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS11 LLLPESKGGSSEPGTELQTTEQQAGASASMAVDAVAEPANAVKGAGKEMKEKTQRMKQPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ATTPPFKTHCQEAETKTKDETAAAEEKVGKNEQGEPEDLKKPEGKNRSAAAVKNEKEQKN
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS11 ATTPPFKTHCQEAETKTKDEMAAAEEKVGKNEQGEPEDLKKPEGKNRSAAAVKNEKEQKN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 QEADVQEVKASTLSPGGGVTVFFHAIISLHFPFNPDLHKVFIRGGEEFGESKWDSNICEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEADVQEVKASTLSPGGGVTVFFHAIISLHFPFNPDLHKVFIRGGEEFGESKWDSNICEL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 HYTRDLGHDRVLVEGIVCISKKHLDKYIPYKYVIYNGESFEYEFIYKHQQKKGEYVNRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HYTRDLGHDRVLVEGIVCISKKHLDKYIPYKYVIYNGESFEYEFIYKHQQKKGEYVNRCL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 FIKSSLLGSGDWHQYYDIVYMKPHGRLQKVMNHITDGPRKDLVKGKQIAAALMLDSTFSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FIKSSLLGSGDWHQYYDIVYMKPHGRLQKVMNHITDGPRKDLVKGKQIAAALMLDSTFSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 LQTWDTINLNSFFTQFEQFCFVLQQPMIYEGQAQLWTDLQYREKEVKRYLWQHLKKHVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQTWDTINLNSFFTQFEQFCFVLQQPMIYEGQAQLWTDLQYREKEVKRYLWQHLKKHVVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 LPDGKSTDFLPVDCPVRSKLKTGLIVLFVVEKIELLLEGSLDWLCHLLTSDASSPDEFHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LPDGKSTDFLPVDCPVRSKLKTGLIVLFVVEKIELLLEGSLDWLCHLLTSDASSPDEFHR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 DLSHILGIPQSWRLYLVNLCQRCMDTRTYTWLGALPVLHCCMELAPRHKDAWRQPEDTWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLSHILGIPQSWRLYLVNLCQRCMDTRTYTWLGALPVLHCCMELAPRHKDAWRQPEDTWA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE5 ALEGLSFSPFREQMLDTSSLLQFMREKQHLLSIDEPLFRSWFSLLPLSHLVMYMENFIEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALEGLSFSPFREQMLDTSSLLQFMREKQHLLSIDEPLFRSWFSLLPLSHLVMYMENFIEH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE5 LGRFPAHILDCLSGIYYRLPGLEQVLNTQDVQDVQNVQNILEMLLRLLDTYRDKIPEEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGRFPAHILDCLSGIYYRLPGLEQVLNTQDVQDVQNVQNILEMLLRLLDTYRDKIPEEAL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE5 SPSYLTVCLKLHEAICSSTKLLKFYELPALSAEIVCRMIRLLSLVDSAGQRDETGNNSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPSYLTVCLKLHEAICSSTKLLKFYELPALSAEIVCRMIRLLSLVDSAGQRDETGNNSVQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE5 TVFQGTLAATKRWLREVFTKNMLTSSGASFTYVKEIEVWRRLVEIQFPAEHGWKESLLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TVFQGTLAATKRWLREVFTKNMLTSSGASFTYVKEIEVWRRLVEIQFPAEHGWKESLLGD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE5 MEWRLTKEEPLSQITAYCNSCWDTKGLEDSVAKTFEKCIIEAVSSACQVNNLSSWETDSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEWRLTKEEPLSQITAYCNSCWDTKGLEDSVAKTFEKCIIEAVSSACQVNNLSSWETDSG
970 980 990 1000 1010 1020
1030 1040 1050 1060
pF1KE5 SQLCSAMTQLRAMKHPLGLSSSANSEIGKWAPSSLAKGNGAEI
:::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQLCSAMTQLRAMKHPLGLSSSANSEIGKWAPSSLAKGNGAEI
1030 1040 1050 1060
>>CCDS58606.1 RNF213 gene_id:57674|Hs108|chr17 (5207 aa)
initn: 6841 init1: 6841 opt: 6841 Z-score: 4556.5 bits: 857.1 E(32554): 0
Smith-Waterman score: 6841; 99.8% identity (99.8% similar) in 1008 aa overlap (1-1008:1-1008)
10 20 30 40 50 60
pF1KE5 MECPSCQHVSKEETPKFCSQCGERLPPAAPIADSENNNSTMASASEGEMECGQELKEEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MECPSCQHVSKEETPKFCSQCGERLPPAAPIADSENNNSTMASASEGEMECGQELKEEGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PCLFPGSDSWQENPEEPCSKASWTVQESKKKKRKKKKKGNKSASSELASLPLSPASPCHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PCLFPGSDSWQENPEEPCSKASWTVQESKKKKRKKKKKGNKSASSELASLPLSPASPCHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 TLLSNPWPQDTALPHSQAQQSGPTGQPSQPPGTATTPLEGDGLSAPTEVGDSPLQAQALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TLLSNPWPQDTALPHSQAQQSGPTGQPSQPPGTATTPLEGDGLSAPTEVGDSPLQAQALG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 EAGVATGSEAQSSPQFQDHTEGEDQDASIPSGGRGLSQEGTGPPTSAGEGHSRTEDAAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EAGVATGSEAQSSPQFQDHTEGEDQDASIPSGGRGLSQEGTGPPTSAGEGHSRTEDAAQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 LLLPESKGGSSEPGTELQTTEQQAGASASTAVDAVAEPANAVKGAGKEMKEKTQRMKQPP
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS58 LLLPESKGGSSEPGTELQTTEQQAGASASMAVDAVAEPANAVKGAGKEMKEKTQRMKQPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ATTPPFKTHCQEAETKTKDETAAAEEKVGKNEQGEPEDLKKPEGKNRSAAAVKNEKEQKN
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS58 ATTPPFKTHCQEAETKTKDEMAAAEEKVGKNEQGEPEDLKKPEGKNRSAAAVKNEKEQKN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 QEADVQEVKASTLSPGGGVTVFFHAIISLHFPFNPDLHKVFIRGGEEFGESKWDSNICEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QEADVQEVKASTLSPGGGVTVFFHAIISLHFPFNPDLHKVFIRGGEEFGESKWDSNICEL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 HYTRDLGHDRVLVEGIVCISKKHLDKYIPYKYVIYNGESFEYEFIYKHQQKKGEYVNRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HYTRDLGHDRVLVEGIVCISKKHLDKYIPYKYVIYNGESFEYEFIYKHQQKKGEYVNRCL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 FIKSSLLGSGDWHQYYDIVYMKPHGRLQKVMNHITDGPRKDLVKGKQIAAALMLDSTFSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FIKSSLLGSGDWHQYYDIVYMKPHGRLQKVMNHITDGPRKDLVKGKQIAAALMLDSTFSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 LQTWDTINLNSFFTQFEQFCFVLQQPMIYEGQAQLWTDLQYREKEVKRYLWQHLKKHVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LQTWDTINLNSFFTQFEQFCFVLQQPMIYEGQAQLWTDLQYREKEVKRYLWQHLKKHVVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 LPDGKSTDFLPVDCPVRSKLKTGLIVLFVVEKIELLLEGSLDWLCHLLTSDASSPDEFHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LPDGKSTDFLPVDCPVRSKLKTGLIVLFVVEKIELLLEGSLDWLCHLLTSDASSPDEFHR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 DLSHILGIPQSWRLYLVNLCQRCMDTRTYTWLGALPVLHCCMELAPRHKDAWRQPEDTWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLSHILGIPQSWRLYLVNLCQRCMDTRTYTWLGALPVLHCCMELAPRHKDAWRQPEDTWA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE5 ALEGLSFSPFREQMLDTSSLLQFMREKQHLLSIDEPLFRSWFSLLPLSHLVMYMENFIEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ALEGLSFSPFREQMLDTSSLLQFMREKQHLLSIDEPLFRSWFSLLPLSHLVMYMENFIEH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE5 LGRFPAHILDCLSGIYYRLPGLEQVLNTQDVQDVQNVQNILEMLLRLLDTYRDKIPEEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGRFPAHILDCLSGIYYRLPGLEQVLNTQDVQDVQNVQNILEMLLRLLDTYRDKIPEEAL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE5 SPSYLTVCLKLHEAICSSTKLLKFYELPALSAEIVCRMIRLLSLVDSAGQRDETGNNSVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SPSYLTVCLKLHEAICSSTKLLKFYELPALSAEIVCRMIRLLSLVDSAGQRDETGNNSVQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE5 TVFQGTLAATKRWLREVFTKNMLTSSGASFTYVKEIEVWRRLVEIQFPAEHGWKESLLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TVFQGTLAATKRWLREVFTKNMLTSSGASFTYVKEIEVWRRLVEIQFPAEHGWKESLLGD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE5 MEWRLTKEEPLSQITAYCNSCWDTKGLEDSVAKTFEKCIIEAVSSACQVNNLSSWETDSG
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEWRLTKEEPLSQITAYCNSCWDTKGLEDSVAKTFEKCIIEAVSSACQSQTSILQGFSYS
970 980 990 1000 1010 1020
1030 1040 1050 1060
pF1KE5 SQLCSAMTQLRAMKHPLGLSSSANSEIGKWAPSSLAKGNGAEI
CCDS58 DLRKFGIVLSAVITKSWPRTADNFDDILKHLLTLADVKHVFRLCGTDEKILANVTEDAKR
1030 1040 1050 1060 1070 1080
1063 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:54:57 2016 done: Tue Nov 8 06:54:58 2016
Total Scan time: 4.560 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]