FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5775, 624 aa
  1>>>pF1KE5775 624 - 624 aa - 624 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0455+/-0.000968; mu= 14.9200+/- 0.058
 mean_var=64.1169+/-12.817, 0's: 0 Z-trim(104.5): 24  B-trim: 50 in 1/50
 Lambda= 0.160173
 statistics sampled from 7915 (7917) to 7915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.243), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS44729.1 FDXACB1 gene_id:91893|Hs108|chr11      ( 624) 4259 993.2       0
CCDS4494.1 FARS2 gene_id:10667|Hs108|chr6          ( 451)  288 75.5 1.7e-13


>>CCDS44729.1 FDXACB1 gene_id:91893|Hs108|chr11           (624 aa)
 initn: 4259 init1: 4259 opt: 4259  Z-score: 5312.7  bits: 993.2 E(32554):    0
Smith-Waterman score: 4259; 99.8% identity (99.8% similar) in 624 aa overlap (1-624:1-624)

               10        20        30        40        50        60
pF1KE5 MAPRRLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAELARDPLAWENLQCLRERGID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAPRRLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAELARDPLAWENLQCLRERGID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VRFGVDCTQLADVFELHEREFDQIYFNFPHCGRKAGVAKNRELLAKFFQSCADVLAEEGE
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS44 VRFGVDCTQLADVFELHEREFDQIYFIFPHCGRKAGVAKNRELLAKFFQSCADVLAEEGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVYPFSCKAVAGYKCTGYRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVYPFSCKAVAGYKCTGYRSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DKSFHVEGALNHIFTRSLPFEGSQPRIFRIKLGNQWFSFPEPEALVGKLNRGFLEAPSCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKSFHVEGALNHIFTRSLPFEGSQPRIFRIKLGNQWFSFPEPEALVGKLNRGFLEAPSCH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PIKTINEKLIAELGKVFPLKRLKCSYPLLPQEGTSVLPFWNCDFLSAAFWISLHEDNSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PIKTINEKLIAELGKVFPLKRLKCSYPLLPQEGTSVLPFWNCDFLSAAFWISLHEDNSNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ESLTGGTSQDVEDFLVSFSELSLLKNPGRDGKEEACEGTCGQAKICLRPSLLVHVQDVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESLTGGTSQDVEDFLVSFSELSLLKNPGRDGKEEACEGTCGQAKICLRPSLLVHVQDVIE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 VPDFLSGSLHILSGPVFQKCHILPFTMPAFHETLFILGVNQNLKDGCLQSLLDHLKGILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VPDFLSGSLHILSGPVFQKCHILPFTMPAFHETLFILGVNQNLKDGCLQSLLDHLKGILD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 SLLTQTLPESSKLSSLVKFVLQSNGKDYMIRVKTHNFSPDCTEDLIIGSVITSATSVIHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLLTQTLPESSKLSSLVKFVLQSNGKDYMIRVKTHNFSPDCTEDLIIGSVITSATSVIHK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 DQCFVFVSMNLDLLAMLVWCISDWRMLWTFDNRFLKNFVPGKIEPFKSHSLYPPCYVHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DQCFVFVSMNLDLLAMLVWCISDWRMLWTFDNRFLKNFVPGKIEPFKSHSLYPPCYVHDV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 SFWIDQKKGFDELEFHTVARAVSQDTIISIQFLSRFQHPKTQQVSLCYRLTYQTCDKALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SFWIDQKKGFDELEFHTVARAVSQDTIISIQFLSRFQHPKTQQVSLCYRLTYQTCDKALT
              550       560       570       580       590       600

              610       620    
pF1KE5 QQQVASMQSQFRKEIQQHLYVIPR
       ::::::::::::::::::::::::
CCDS44 QQQVASMQSQFRKEIQQHLYVIPR
              610       620    

>>CCDS4494.1 FARS2 gene_id:10667|Hs108|chr6               (451 aa)
 initn: 183 init1: 105 opt: 288  Z-score: 355.9  bits: 75.5 E(32554): 1.7e-13
Smith-Waterman score: 292; 26.4% identity (60.3% similar) in 292 aa overlap (363-624:162-450)

            340       350       360       370         380       390
pF1KE5 EEACEGTCGQAKICLRPSLLVHVQDVIEVPDFLSGSLH--ILSGPVFQKCHILPFTMPAF
                                     :.: ..:   .. : :... .:    .: :
CCDS44 PADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIF
             140       150       160       170       180       190 

                400          410       420       430               
pF1KE5 H--ETLFILGVNQ---NLKDGCLQSLLDHLKGILDSLLTQTLPESSKL------SSLVKF
       :  :.. ... ..   ..:::   .:... .    .  :.:. :. ::      ..:...
CCDS44 HQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQETHTM-EAVKLVEFDLKQTLTRL
             200       210       220       230        240       250

     440       450                    460       470        480     
pF1KE5 VLQSNGKDYMIRVK------TH-------NFSPDCTEDLIIGSVITS-ATSVIHKDQCFV
       . .  : .  ::        ::       ::  .  : :  : .  . ..:.  .:.   
CCDS44 MAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGW
              260       270       280       290       300       310

         490       500       510       520          530       540  
pF1KE5 FVSMNLDLLAMLVWCISDWRMLWTFDNRFLKNFVPGKIEP---FKSHSLYPPCYVHDVSF
         ...:. :::... : : :..:  :.::::.:  ..:.    :.  : ::   ..:.::
CCDS44 AFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAV-INDISF
              320       330       340       350       360          

            550       560       570       580       590       600  
pF1KE5 WIDQKKGFDELEFHTVARAVSQDTIISIQFLSRFQHPKTQQVSLCYRLTYQTCDKALTQQ
       :. ... . : .:. ..:... : . .......: ::::...: :::.::.  ...:.:.
CCDS44 WLPSEN-YAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQR
     370        380       390       400       410       420        

            610       620     
pF1KE5 QVASMQSQFRKEIQQHLYVIPR 
       .:  ... ...   : : :  : 
CCDS44 EVRHIHQALQEAAVQLLGVEGRF
      430       440       450 




624 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:32:02 2016 done: Tue Nov  8 06:32:02 2016
 Total Scan time:  2.660 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]