FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5772, 593 aa
  1>>>pF1KE5772 593 - 593 aa - 593 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9803+/-0.000377; mu= 15.7577+/- 0.023
 mean_var=81.2021+/-16.603, 0's: 0 Z-trim(114.6): 48  B-trim: 739 in 1/49
 Lambda= 0.142328
 statistics sampled from 24507 (24551) to 24507 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.288), width:  16
 Scan time:  8.100

The best scores are:                                      opt bits E(85289)
NP_078925 (OMIM: 209900,209901) Bardet-Biedl syndr ( 593) 3849 800.3       0


>>NP_078925 (OMIM: 209900,209901) Bardet-Biedl syndrome   (593 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 4271.2  bits: 800.3 E(85289):    0
Smith-Waterman score: 3849; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593)

               10        20        30        40        50        60
pF1KE5 MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL
              490       500       510       520       530       540

              550       560       570       580       590   
pF1KE5 VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA
              550       560       570       580       590   




593 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:30:47 2016 done: Tue Nov  8 06:30:49 2016
 Total Scan time:  8.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]