Result of FASTA (ccds) for
pFN21AE5754
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5754, 736 aa
1>>>pF1KE5754 736 - 736 aa - 736 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7487+/-0.00115; mu= 8.1287+/- 0.069
mean_var=117.6872+/-23.117, 0's: 0 Z-trim(105.4): 27 B-trim: 5 in 2/52
Lambda= 0.118225
statistics sampled from 8391 (8401) to 8391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.258), width: 16
Scan time: 3.260
The best scores are: opt bits E(32554)
CCDS1863.1 PAPOLG gene_id:64895|Hs108|chr2 ( 736) 4845 838.1 0
CCDS9946.1 PAPOLA gene_id:10914|Hs108|chr14 ( 745) 2817 492.2 1.2e-138
CCDS78202.1 PAPOLB gene_id:56903|Hs108|chr7 ( 637) 2540 444.9 1.8e-124
CCDS58334.1 PAPOLA gene_id:10914|Hs108|chr14 ( 285) 1457 260.1 3.4e-69
CCDS58335.1 PAPOLA gene_id:10914|Hs108|chr14 ( 238) 994 181.1 1.7e-45
>>CCDS1863.1 PAPOLG gene_id:64895|Hs108|chr2 (736 aa)
initn: 4845 init1: 4845 opt: 4845 Z-score: 4472.0 bits: 838.1 E(32554): 0
Smith-Waterman score: 4845; 100.0% identity (100.0% similar) in 736 aa overlap (1-736:1-736)
10 20 30 40 50 60
pF1KE5 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 RHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 RHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNML
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 GFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 LEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 PGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 KIEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 KIEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 TPFNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 TPFNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 PTVCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PTVCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 VEKFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VEKFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPA
670 680 690 700 710 720
730
pF1KE5 NNIRVIKNSIRLTLNR
::::::::::::::::
CCDS18 NNIRVIKNSIRLTLNR
730
>>CCDS9946.1 PAPOLA gene_id:10914|Hs108|chr14 (745 aa)
initn: 2784 init1: 2669 opt: 2817 Z-score: 2602.5 bits: 492.2 E(32554): 1.2e-138
Smith-Waterman score: 2844; 61.2% identity (78.8% similar) in 747 aa overlap (12-736:13-745)
10 20 30 40 50
pF1KE5 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNH
.: :::::::::::::.::: : . :::::...:::::::.::::..
CCDS99 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RLVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVA
:...:::::::::::: ..::::::: ::. .::::::::::::::::::::::::::::
CCDS99 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 PRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISD
::::.::::: ::..::: :. ...:::::.:::::::. :::::::..:::::.::: .
CCDS99 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 NLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNM
.::::::: :..:::::::::::::::::::::::: ..:::::::.::::::..::::.
CCDS99 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 LGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVW
::::::::::::::::::::::: :::::::::::::::::::::::::::: :::::::
CCDS99 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVW
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSK
::::::::::::::::::::::::::::::.::: :::::::::::.::::: .:..:::
CCDS99 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 LLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQS
:.: :::::::.::::: ::: ::...::::::::::::.:::.::.:::::::::::::
CCDS99 LFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 FPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEG
::. ::. ... .:: .:..:...::.:....::::::::::::::::: : .:..
CCDS99 FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE5 MKIEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDN
::: : :::.::::. :: ..::::::.: : : .:..: :: : :.::
CCDS99 MKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGV---------KLTALNDSSLDLSMDSDN
490 500 510 520 530
540 550 560 570 580
pF1KE5 GTPFNSPASKSD-SP--SVGETE-RNSAEPAAVIVEKPLSVPPAQGLSIPVI-------G
. ::.: . :: : : .. ::: :: ... .. : .:.: . :
CCDS99 SMSVPSPTSATKTSPLNSSGSSQGRNS--PAPAVTAASVTNIQATEVSVPQVNSSESSGG
540 550 560 570 580
590 600 610 620 630 640
pF1KE5 AKVDSTVKTVSPPTVCTIPT-VVGRNVIP-RITTPHNPAQGQPHLNGMSNITKTVTP---
.. .: .:.. :.. : .:.: : :...: ..:. .: . :: ::
CCDS99 TSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPPPRSSGNAATSG-NAATKIPTPIVG
590 600 610 620 630 640
650 660 670 680 690
pF1KE5 -KRSHSPSIDGTPKRLKDVEKFIR-----LESTFKDPRTAEERKRKSVDAIGGESMPIPT
::. :: . .::. : : : . .: :.:. ... .:.. .
CCDS99 VKRTSSPHKEESPKKTKTEEDETSEDANCLALSGHDKTEAKEQLDTETSTTQSETIQTAA
650 660 670 680 690 700
700 710 720 730
pF1KE5 IDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR
. .: : .: : . .::: : ::::::.: :::
CCDS99 SLLASQKT-SSTDLSDIPA-LPANPIPVIKNSIKLRLNR
710 720 730 740
>>CCDS78202.1 PAPOLB gene_id:56903|Hs108|chr7 (637 aa)
initn: 2503 init1: 2503 opt: 2540 Z-score: 2348.3 bits: 444.9 E(32554): 1.8e-124
Smith-Waterman score: 2540; 63.7% identity (82.9% similar) in 615 aa overlap (19-626:21-627)
10 20 30 40 50
pF1KE5 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELN
::..:::::: ::: : . ::.::....::::::.::::.
CCDS78 MMPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 HRLVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCV
.:..:: :::::::::: ..::::.:: ::. .:::::::::::::::::::::::::::
CCDS78 RRILVLEKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 APRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTIS
:: ::.::::: ::. ::: :. ...:::::.:::::::. :::::::..:::::.:::
CCDS78 APSHVDRSDFFTSFYAKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 DNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSN
..::::::: :..:::::::::::::::::::::::: ..:::::::.::::: ..::::
CCDS78 EDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 MLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPV
.:::::::::::::::::::::::.:::::.:::::::.::::::::::.::: ::::::
CCDS78 ILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWS
::::::::::::::::::::::::::::::: ::: ::.::::::::.: ::: .:..::
CCDS78 WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 KLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQ
::.: :.:::::.::::: ::::::..:::::::::::::.:::.::.::::::::::::
CCDS78 KLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 SFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKE
:::. ::. ... .:: .:. ... .:.: ..:::::::::::::::::: : .:..
CCDS78 SFPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE5 GMKIEATHVKKKQLHHYLPAEILQKKKKQS-----LSDVNRSSGGLQSKRLSLDSSCLDS
:::: : :...:.::. :: ..:: :: .: :.:.: :: :.. .: . :
CCDS78 GMKITAMHLRRKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAG--CENSMSVPS
490 500 510 520 530
540 550 560 570 580 590
pF1KE5 SRDTDNGTPFNSPASKSDSPSVGETERNSAEPAAV-IVEKPLSVPPAQGLSIPVIGAKVD
: .: . :. : .. .::... . :. :. . . ... ..:... .
CCDS78 STSTMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSGVALN------E
540 550 560 570 580 590
600 610 620 630 640 650
pF1KE5 STVKTVSPPTVCTIP-TVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSI
: ..:: :.. : ..:.: : : :
CCDS78 SIPHAVSQPAISPSPKAMVARVVSSTCLISHPDLQETQQQTYLIL
600 610 620 630
660 670 680 690 700 710
pF1KE5 DGTPKRLKDVEKFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKEL
>>CCDS58334.1 PAPOLA gene_id:10914|Hs108|chr14 (285 aa)
initn: 1457 init1: 1457 opt: 1457 Z-score: 1355.8 bits: 260.1 E(32554): 3.4e-69
Smith-Waterman score: 1457; 79.8% identity (94.0% similar) in 267 aa overlap (12-278:13-279)
10 20 30 40 50
pF1KE5 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNH
.: :::::::::::::.::: : . :::::...:::::::.::::..
CCDS58 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RLVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVA
:...:::::::::::: ..::::::: ::. .::::::::::::::::::::::::::::
CCDS58 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 PRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISD
::::.::::: ::..::: :. ...:::::.:::::::. :::::::..:::::.::: .
CCDS58 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 NLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNM
.::::::: :..:::::::::::::::::::::::: ..:::::::.::::::..::::.
CCDS58 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 LGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVW
::::::::::::::::::::::: :::::::::::::::
CCDS58 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWYVFRLY
250 260 270 280
300 310 320 330 340 350
pF1KE5 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSK
>>CCDS58335.1 PAPOLA gene_id:10914|Hs108|chr14 (238 aa)
initn: 989 init1: 989 opt: 994 Z-score: 930.2 bits: 181.1 E(32554): 1.7e-45
Smith-Waterman score: 994; 75.6% identity (92.2% similar) in 193 aa overlap (12-204:13-205)
10 20 30 40 50
pF1KE5 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNH
.: :::::::::::::.::: : . :::::...:::::::.::::..
CCDS58 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RLVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVA
:...:::::::::::: ..::::::: ::. .::::::::::::::::::::::::::::
CCDS58 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 PRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISD
::::.::::: ::..::: :. ...:::::.:::::::. :::::::..:::::.::: .
CCDS58 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 NLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNM
.::::::: :..::::::::::: :
CCDS58 DLDLRDDSLLKNLDIRCIRSLNGMRKPTSFCVLQFLSDISCFYTSFVLKLFIAILLTQ
190 200 210 220 230
736 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:22:27 2016 done: Tue Nov 8 06:22:27 2016
Total Scan time: 3.260 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]